PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G117200.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 101aa    MW: 11497.9 Da    PI: 9.0414
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G117200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.86e-091258144
                        TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        r +WT+ E +l+ +a +++ ++   +W  Ia+ +g  ++++++k ++
  Potri.009G117200.2 12 RSAWTPRENKLFEKALALFDKDtpdRWQNIAKAVGGVKSAEEVKKHY 58
                        789********************************668********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-4862IPR009057Homeodomain-like
PROSITE profilePS5129310.0171066IPR017884SANT domain
SMARTSM007177.4E-91164IPR001005SANT/Myb domain
PfamPF002492.9E-71258IPR001005SANT/Myb domain
SuperFamilySSF466891.09E-111370IPR009057Homeodomain-like
CDDcd001671.69E-61458No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MSSSYQASRN SRSAWTPREN KLFEKALALF DKDTPDRWQN IAKAVGGVKS AEEVKKHYEI  60
LIEDLQHIES GRIPIPKYKS SGSCNNTNEE ERLLKYLNLQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-317100391RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G117200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464935.11e-69protein RADIALIS-like 4 isoform X2
SwissprotQ1A1736e-32RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2K1Z6H23e-68A0A2K1Z6H2_POPTR; Uncharacterized protein
STRINGPOPTR_0009s11990.11e-61(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.17e-34RAD-like 1