PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G120800.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 676aa    MW: 73963.8 Da    PI: 6.5477
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G120800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.9e-094164531954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Potri.009G120800.1 416 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 453
                         664459******************************88 PP
2BELL127.54.8e-41278349172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         erqelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpY++lAl++iS+hFrcL+dai++qi
  Potri.009G120800.1 278 ERQELQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYIALALQTISQHFRCLRDAITGQI 349
                         79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.1E-67202347IPR006563POX domain
PfamPF075263.5E-52208346IPR006563POX domain
PROSITE profilePS5007112.163394457IPR001356Homeobox domain
CDDcd000866.74E-13397458No hitNo description
SMARTSM003891.0E-9397461IPR001356Homeobox domain
SuperFamilySSF466892.61E-17398464IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-29400463IPR009057Homeodomain-like
PfamPF059204.6E-18414453IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MATYYTSSNN QRDAAAMVYL PGSYPEAPVL HGNMMMYMNS GSYSDNLAGN SHHQNNCIEF  60
QSVENSANPQ QQEILSNLGG SRIGEHDFGA WRDGRNEMLV MQSVSGASSI LHGAQSLQGQ  120
GLSLSLGTQI PSGTQMPSIP YRNTNPGLTS FLSPNFSISG EGGGRNGSSR DEQSRNIEYL  180
TPVFSGGNHD VNKGDLSPYG MNSVGRTIPN SKYLKAAQQL LDEVVNVQKA LKQPDKEKNQ  240
TTSEHGLNRA KEGDSGSKNG ASNPQESTNS PSELSHAERQ ELQNKLTKLL SMLDEVDRRY  300
KQYYHQMQIV VSSFDVIAGC GAAKPYIALA LQTISQHFRC LRDAITGQIR ATRNNLGEQE  360
TSENSKGVGI SRLRYVDQQL RQHRALQQLG MMKQHAWRPQ RGLPESSVSI LRAWLFEHFL  420
HPYPKDSDKI MLARQTGLTR SQVSNWFINA RVRLWKPMVE EMYKEELGDA EMDSNSSSEN  480
AAKATKGDMG TSEEKGEEFQ QSASSTATGR CSGGQLMDSK SDHVSEVEMA GTTARSNFHN  540
GTRGETFTEY GLLKLREDQR PSMEDCSLFS DAMAHSEGGG DRFMAAAAAA YQMSEVRRFG  600
NGSGVSLTLG LQHCEGGSLP MSGTTHHGFV SVRGDDDIYN AASSVGAGPT DFECLNPGNR  660
QHRFSSSHVF HDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A6e-17403460158Homeobox protein Meis1
4xrs_B6e-17403460158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G120800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0288611e-134CT028861.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464462.10.0BEL1-like homeodomain protein 7
TrEMBLA0A2K1Z6R30.0A0A2K1Z6R3_POPTR; Uncharacterized protein
STRINGPOPTR_0004s16660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-140BEL1-like homeodomain 6