PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.009G121600.2

Common Name

POPTR_0009s12450g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

SRS

Protein Properties

Length: 180aa MW: 19927.6 Da PI: 9.6676

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.009G121600.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	106.2	5.3e-33	8	71	4	67
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa 67 g+++CqdCGnqakkdC ++RCRtCCks+gf+C+thvkstWvpa++rr+r q l+ ++++ + + Potri.009G121600.2 8 GGSRCQDCGNQAKKDCFYMRCRTCCKSKGFHCQTHVKSTWVPAYRRRQRAQDLSPVQQHQLQGH 71 6789*********************************************999988877765543 PP
2	DUF702	81.1	3e-25	81	135	100	154
DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ +++P+ev+s+a frc rvss+d++ +++aYqt v+igGhvfkGiLydqG+e+ Potri.009G121600.2 81 SSGTNFPAEVNSTATFRCFRVSSIDEAVDQVAYQTRVNIGGHVFKGILYDQGPEN 135 34456************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.6E-55	9	134	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.3E-29	12	53	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.1E-24	86	133	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MRPAGCLGGS RCQDCGNQAK KDCFYMRCRT CCKSKGFHCQ THVKSTWVPA YRRRQRAQDL 60 SPVQQHQLQG HNPKRLRENP SSGTNFPAEV NSTATFRCFR VSSIDEAVDQ VAYQTRVNIG 120 GHVFKGILYD QGPENRALTP ATTTLASTSG AAECLARPSF PFPLNAFMSD KQLFLHPKS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.009G121600.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002313022.3	1e-125	protein SHI RELATED SEQUENCE 1
Swissprot	Q9LQZ5	1e-51	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A3N7FNC2	1e-124	A0A3N7FNC2_POPTR; Uncharacterized protein
STRING	POPTR_0009s12450.1	1e-122	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	6e-52	SHI-related sequence3

Link Out ? help Back to Top
Phytozome	Potri.009G121600.2
Entrez Gene	7456348

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]