PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G124400.1
Common NamePOPTR_0009s12730g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family DBB
Protein Properties Length: 204aa    MW: 22650.4 Da    PI: 6.6934
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G124400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.74.9e-08333434
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                        ++C+ +e+  ++lfC  ++  lC++C ++ H
  Potri.009G124400.1  3 TICDVCESAAAILFCAADEAALCRSCDEKVH 33
                        68**************************998 PP
2zf-B_box253.9e-085391337
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                         + C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Potri.009G124400.1 53 VPQCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91
                        689**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.21147IPR000315B-box-type zinc finger
SMARTSM003361.3E-8147IPR000315B-box-type zinc finger
CDDcd000211.07E-6345No hitNo description
PfamPF006432.8E-6334IPR000315B-box-type zinc finger
SMARTSM003361.4E-105196IPR000315B-box-type zinc finger
PfamPF006437.0E-65485IPR000315B-box-type zinc finger
CDDcd000211.57E-65484No hitNo description
PROSITE profilePS501198.6175696IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MRTICDVCES AAAILFCAAD EAALCRSCDE KVHLCNKLAS RHVRVGLADP SAVPQCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPGR MEEQGQQPLD  120
HNETRRDQNQ PLKLTARENK QNHRASPVPM VENNTDSDGK MDNNLIDLNA RPQRIHGQNS  180
TNQENHESSS AVPVGSFKRE PQK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.49570.0stem
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G124400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1457660.0EF145766.1 Populus trichocarpa clone WS0113_E07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313009.11e-151B-box zinc finger protein 19 isoform X1
RefseqXP_024463705.11e-151B-box zinc finger protein 19 isoform X1
RefseqXP_024463706.11e-151B-box zinc finger protein 19 isoform X2
SwissprotC0SVM59e-85BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A3N7FND91e-149A0A3N7FND9_POPTR; Uncharacterized protein
STRINGPOPTR_0009s12730.11e-150(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Representative plantOGRP33521628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.14e-87DBB family protein