PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G125300.2
Common NamePOPTR_0009s12820g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family BBR-BPC
Protein Properties Length: 321aa    MW: 35666.6 Da    PI: 9.9667
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G125300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind352.31.1e-10713201301
           GAGA_bind   1 mdddgsre..rnkg.yye.....................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkal 67 
                         mdd g+++  r+k  yy+                     ++++l+  +++++m+++ erd++irernlal+ekk+a+a+rd+a +qr+kal
  Potri.009G125300.2   1 MDDGGQHQngRFKMdYYKaahphphppawnmmsqhqvkeQTNALA--MNKKIMTILIERDDAIRERNLALAEKKEALAARDEAIQQREKAL 89 
                         88888876789998899999******9999999887743335555..99****************************************** PP

           GAGA_bind  68 aernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakk 158
                          er+kal+erdn+l+a++++en+  ++ p + ++ +g+k i +     +++   +a ++ e+++++alpi++ + e+ +++++k+++++k 
  Potri.009G125300.2  90 VERDKALMERDNALAAIQYRENA--MSYPLSGGSQRGSKRIPHPVY--HSNGMSEALDTGEMHITDALPISSVTAETGKARQTKRSKENKA 176
                         **********************8..5678889999******97766..77777889999*************9999999999998888888 PP

           GAGA_bind 159 pkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvst 248
                            k ak+++k s++ ++ +k+  +d ++ k e++s+d++ln +++De+t+P+PvCsCtG++rqCYkWG+GGWqSaCCttt+S yPLP+++
  Potri.009G125300.2 177 VGLKAAKSPRKGSRVGEDLNKQGASDgKKIKVEWDSQDVGLNLINFDETTMPAPVCSCTGVPRQCYKWGSGGWQSACCTTTMSSYPLPQMP 267
                         87788888888766666655555555699************************************************************** PP

           GAGA_bind 249 krrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                         ++r+aRi+grKmS+++f++lL++LaaeG+dl+ p+DLkd+WA+HGtn+++ti+
  Potri.009G125300.2 268 NKRHARIGGRKMSGNVFTRLLSRLAAEGHDLAIPLDLKDYWARHGTNRYITIK 320
                         ****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012265.5E-1751320IPR010409GAGA-binding transcriptional activator
PfamPF062171.8E-1011320IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDDGGQHQNG RFKMDYYKAA HPHPHPPAWN MMSQHQVKEQ TNALAMNKKI MTILIERDDA  60
IRERNLALAE KKEALAARDE AIQQREKALV ERDKALMERD NALAAIQYRE NAMSYPLSGG  120
SQRGSKRIPH PVYHSNGMSE ALDTGEMHIT DALPISSVTA ETGKARQTKR SKENKAVGLK  180
AAKSPRKGSR VGEDLNKQGA SDGKKIKVEW DSQDVGLNLI NFDETTMPAP VCSCTGVPRQ  240
CYKWGSGGWQ SACCTTTMSS YPLPQMPNKR HARIGGRKMS GNVFTRLLSR LAAEGHDLAI  300
PLDLKDYWAR HGTNRYITIK *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.26020.0catkin| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G125300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9822590.0FJ982259.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006379265.10.0protein BASIC PENTACYSTEINE4
SwissprotQ8S8C61e-137BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLH1ZN440.0H1ZN44_POPTR; BBR-BPC family protein
STRINGPOPTR_0009s12820.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-133basic pentacysteine 4