PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G134000.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 199aa    MW: 21716.5 Da    PI: 7.3728
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G134000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34.2e-0914382247
                        T-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47
                          W++Ia +++ gRt++++k++w+++
  Potri.009G134000.2 14 SKWSLIAGRLP-GRTDNEIKNYWNTH 38
                        46*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.151143IPR017930Myb domain
CDDcd001673.36E-6439No hitNo description
Gene3DG3DSA:1.10.10.601.2E-13840IPR009057Homeodomain-like
SuperFamilySSF466891.87E-81148IPR009057Homeodomain-like
PfamPF002494.3E-71338IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MSSLSNSIAS LETSKWSLIA GRLPGRTDNE IKNYWNTHIR RKLLNRGIDP ATHRPLNEPA  60
VQEATTTISF TTTTTSVLEE ESLGSIIKEE NKEKIISATA FVCKEEKTQV QERCPDLNLE  120
LGISLPSQNQ PDHHQPFKTG GSRSLCFACS LGLQNSKDCS CNVIVSTVGS SGSTSTKTGY  180
DFLGMKSGVL DYRSLEMK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.171440.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G134000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ8074700.0FJ807470.1 Populus trichocarpa MYB transcription factor (MYB156) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312966.11e-134myb-related protein 308
SwissprotP813933e-52MYB08_ANTMA; Myb-related protein 308
TrEMBLB9HR691e-133B9HR69_POPTR; MYB family protein
STRINGPOPTR_0009s13640.11e-134(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34990.15e-40myb domain protein 32
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]