PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G147700.1
Common NamePOPTR_0009s14990g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 221aa    MW: 24658.1 Da    PI: 8.4791
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G147700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.1e-1757108156
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         + y+GVr++   ++Wv+e+r+p   +k+ r+++g+f ++e+Aa+a++ a+++l+ge
  Potri.009G147700.1  57 PVYRGVRRRN-GNKWVCEVREP---NKKSRIWVGTFKSPEMAARAHDVAALALKGE 108
                         68*****887.9******9998...347*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.0E-1357108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2758117IPR001471AP2/ERF domain
SMARTSM003808.4E-2358121IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-1958116IPR016177DNA-binding domain
PROSITE profilePS5103220.29758115IPR001471AP2/ERF domain
CDDcd000186.00E-2659117No hitNo description
PRINTSPR003676.5E-75970IPR001471AP2/ERF domain
PRINTSPR003676.5E-78197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MEFENYSSSQ SSIRQTLSCK QCNSPDIYNL PRGQERPVAV LKKNKAGRKK FKETRHPVYR  60
GVRRRNGNKW VCEVREPNKK SRIWVGTFKS PEMAARAHDV AALALKGELA ALNFLDSALI  120
LPRAKSSSAR DIQRAALAAT EPFSNMVMSC SNNCCSEKVP NHSNATFFDE EALFNMPGLL  180
DSMAEGLILT PPAMARGVYW DDMACSTDLT LWEDDYLDSQ *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds and apices. {ECO:0000269|PubMed:17136305}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G147700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0136250.0KM013625.1 Populus balsamifera isolate POR10 CBF6 gene, partial cds.
GenBankKM0136260.0KM013626.1 Populus balsamifera isolate POR5 CBF6 gene, partial cds.
GenBankKM0136270.0KM013627.1 Populus balsamifera isolate POR6 CBF6 gene, partial cds.
GenBankKM0136280.0KM013628.1 Populus balsamifera isolate NWL6 CBF6 gene, partial cds.
GenBankKM0136290.0KM013629.1 Populus balsamifera isolate NWL15 CBF6 gene, partial cds.
GenBankKM0136300.0KM013630.1 Populus balsamifera isolate NWL4 CBF6 gene, partial cds.
GenBankKM0136310.0KM013631.1 Populus balsamifera isolate NWL3 CBF6 gene, partial cds.
GenBankKM0136320.0KM013632.1 Populus balsamifera isolate NWL8 CBF6 gene, partial cds.
GenBankKM0136330.0KM013633.1 Populus balsamifera isolate NWL5 CBF6 gene, partial cds.
GenBankKM0136340.0KM013634.1 Populus balsamifera isolate SOU13 CBF6 gene, partial cds.
GenBankKM0136350.0KM013635.1 Populus balsamifera isolate SOU14 CBF6 gene, partial cds.
GenBankKM0136360.0KM013636.1 Populus balsamifera isolate COT5 CBF6 gene, partial cds.
GenBankKM0136370.0KM013637.1 Populus balsamifera isolate COT4 CBF6 gene, partial cds.
GenBankKM0136380.0KM013638.1 Populus balsamifera isolate COT7 CBF6 gene, partial cds.
GenBankKM0136390.0KM013639.1 Populus balsamifera isolate COT6 CBF6 gene, partial cds.
GenBankKM0136400.0KM013640.1 Populus balsamifera isolate COT2 CBF6 gene, partial cds.
GenBankKM0136410.0KM013641.1 Populus balsamifera isolate COT9 CBF6 gene, partial cds.
GenBankKM0136450.0KM013645.1 Populus balsamifera isolate COT3 CBF6 gene, partial cds.
GenBankKM0136470.0KM013647.1 Populus balsamifera isolate SOU15 CBF6 gene, partial cds.
GenBankKM0136480.0KM013648.1 Populus balsamifera isolate SOU1 CBF6 gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464341.14e-97dehydration-responsive element-binding protein 3
SwissprotA2WZI42e-53DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z52e-53DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLA9PL471e-110A9PL47_POPTR; C-repeat binding facor 6
STRINGPOPTR_0009s14990.11e-165(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.13e-40C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]