PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G163500.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YB
Protein Properties Length: 182aa    MW: 20279.1 Da    PI: 10.1199
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G163500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB46.11.2e-1446142595
               NF-YB   5 drflPianvsrimkkvl....Panaki..skdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 
                          ++lP a v r++k +l    P+++ i   kda     e +  fi ++++ a+d c++ kr+t+n+dd++ al ++ f ++v plkv l++
  Potri.009G163500.1  46 AEELPKAIVRRVVKDTLsrcsPEDSDInvHKDALLAFSESARIFIHYLSATANDICKESKRQTMNADDVFKALEDIEFPEFVGPLKVSLSE 136
                         5789*********98875555666654217999999******************************************************9 PP

               NF-YB  90 yreleg 95 
                         ++  +g
  Potri.009G163500.1 137 FKRKNG 142
                         987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.3E-3138165IPR009072Histone-fold
PfamPF008084.1E-948118IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471137.68E-2449151IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
EKASTLPYPT LPLELYKERK RGKGNTVVHF REREREMETE KVVAEAEELP KAIVRRVVKD  60
TLSRCSPEDS DINVHKDALL AFSESARIFI HYLSATANDI CKESKRQTMN ADDVFKALED  120
IEFPEFVGPL KVSLSEFKRK NGGKKVGSAQ NKEVQKKRKT GGPSKKSGGK STPKKGDTGE  180
K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137158KRKNGGKKVGSAQNKEVQKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.49130.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G163500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1460610.0EF146061.1 Populus trichocarpa clone WS0115_E10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312821.11e-101DNA polymerase epsilon subunit 3
TrEMBLA9PCR21e-100A9PCR2_POPTR; Uncharacterized protein
STRINGPOPTR_0009s16500.11e-100(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118633236
Representative plantOGRP78621516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.14e-45nuclear factor Y, subunit B11