PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G001300.1
Common NamePOPTR_0010s00360g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 154aa    MW: 16419.7 Da    PI: 10.4775
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G001300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.31.1e-183467134
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                        C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk+
  Potri.010G001300.1 34 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKK 67
                        ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.05E-122868No hitNo description
PROSITE profilePS5011412.2682864IPR000679Zinc finger, GATA-type
SMARTSM004015.6E-132878IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.7E-163268IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.31E-123368No hitNo description
PROSITE patternPS0034403459IPR000679Zinc finger, GATA-type
PfamPF003201.2E-163468IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MLSSVSLIVF QQGSESEEMS SKSLETESPQ KKTCADCGTS KTPLWRGGPA GPKSLCNACG  60
IRSRKKKRDI LGLNKGGAAA NDKRAKKGST NNGSSNYNNN NKQLGDGLKQ RLLALGREVL  120
VQGSTVERRR RKLGEEEQAA VLLMALSYGS VYA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126132ERRRRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.124280.0bud| catkin
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G001300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006378027.13e-98GATA transcription factor 16 isoform X1
SwissprotQ8LG101e-44GAT15_ARATH; GATA transcription factor 15
TrEMBLU5FXH11e-106U5FXH1_POPTR; Uncharacterized protein
STRINGPOPTR_0010s00360.11e-106(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-43GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]