PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G036400.1
Common NamePOPTR_0010s04580g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 262aa    MW: 29434.5 Da    PI: 7.7016
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G036400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002992114123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C k F ++  L  H++ H
  Potri.010G036400.1  92 FECQYCFKEFANSQALGGHQNAH 114
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.6E-588118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.19E-688119No hitNo description
PROSITE profilePS5015711.2492119IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEKEGSNMFS SILDGDQNGH SAQSCSVEKK LRLFGFELNP CKNNESCVKG CVEGDHESVN  60
SSNTVLSSER EKPVKEKSSS SGHHGPADDK KFECQYCFKE FANSQALGGH QNAHKKERLK  120
KKRLQLQARK ASLSCYLQPY QNNPSYNYQY GSSTTPWFFD PSCSTTPDQF TLYEESQISF  180
NPCEDSHLND SQISNWHAVP AQVIPFQQDT RYKFTFTHAD QRSRDYKPSP LLASKKTCKS  240
ADLQLDLSLQ SNIQSSSRTG I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G036400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006378183.10.0zinc finger protein 5
TrEMBLU5FXW80.0U5FXW8_POPTR; Uncharacterized protein
STRINGPOPTR_0010s04580.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95942635
Representative plantOGRP1020968
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.13e-13zinc finger protein 5