PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G040000.4
Common NamePOPTR_0010s04920g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 201aa    MW: 22464.3 Da    PI: 7.8038
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G040000.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.4e-1184131455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Potri.010G040000.4  84 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 131
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-1878149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.39E-1078135No hitNo description
PROSITE profilePS5088815.82880130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1880149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-884131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-1086136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MDPPARMNEG GPYSLEEIWQ FPINGSGRGH FDLLNLEQRA AASVRKHEAE PSSGKHVEHK  60
TQPPEPSKQD YIHVRARRGQ ATDSHSLAER ARREKISERM KILQDLVPGC NKVIGKALVL  120
DEIINYIQSL QRQVEFLSMK LEAVNTRMNP GIEVFASKDF GQTFDTAGMA FGSQATREYS  180
RGTSPEWLHM QVGGGFERTS *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.85621e-149leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G040000.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024465342.11e-138transcription factor BHLH089 isoform X3
SwissprotQ69WS37e-74BH094_ORYSJ; Transcription factor BHLH094
TrEMBLU5FXZ61e-139U5FXZ6_POPTR; Uncharacterized protein
STRINGPOPTR_0010s04920.11e-140(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.17e-85BIG PETAL P