PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G064000.1
Common NamePOPTR_0010s07450g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 262aa    MW: 30364.4 Da    PI: 9.4372
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G064000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.81.4e-192269148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd llv++v+++G g+W+++ar  g++R +k+c++rw +yl
  Potri.010G064000.1 22 KGPWTAEEDRLLVEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 69
                        79********************************************97 PP
2Myb_DNA-binding53.26.9e-1775119147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg  T+ E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++
  Potri.010G064000.1  75 RGQITPHEERIIVELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119
                         7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.9881773IPR017930Myb domain
SuperFamilySSF466891.48E-3019116IPR009057Homeodomain-like
SMARTSM007176.5E-172171IPR001005SANT/Myb domain
PfamPF002498.1E-182269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-242376IPR009057Homeodomain-like
CDDcd001672.48E-122469No hitNo description
PROSITE profilePS5129420.1174124IPR017930Myb domain
SMARTSM007176.8E-1574122IPR001005SANT/Myb domain
PfamPF002496.3E-1475119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2477123IPR009057Homeodomain-like
CDDcd001671.68E-1079120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MSLGVMAGQL RWGGLIEEGW RKGPWTAEED RLLVEYVRLH GEGRWNSVAR LAGLKRNGKS  60
CRLRWVNYLR PDLKRGQITP HEERIIVELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF  120
KKKAKLSPDN SDKARTHLLK RQQFQQQQQQ LQQQQQQIQH QQLLQLNQLD MKMIMSLLDE  180
NENKAPHTPQ MSQEMAPHAV YPNTTEEHGL LYNMFNASVP EASNEDILWD GLWNLDDVHG  240
NFGVACATSR ASMHNLVSPF C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-28912414128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G064000.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2976920.0KC297692.1 Populus tomentosa MYB gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314515.20.0myb-related protein 305
TrEMBLA0A2K1YPW10.0A0A2K1YPW1_POPTR; Uncharacterized protein
STRINGPOPTR_0010s07450.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.12e-86myb domain protein 305