PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G074500.1
Common NamePOPTR_0010s08530g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 214aa    MW: 23851.8 Da    PI: 8.3789
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G074500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26e-055678123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C + F++   L  H+++H
  Potri.010G074500.1 56 YTCSFCRREFKSAQALGGHMNVH 78
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.19E-65382No hitNo description
SMARTSM003550.00525678IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-55679IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1575683IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MERNSFSSNL KDHSIGSEAC NNTNSNKKLR DSWNLSSCQS FGEDYLDSLS WPPRSYTCSF  60
CRREFKSAQA LGGHMNVHRR DRARLRRSPP RDAQCPVPNL NPNPSLCPPF TRTLPSLVSP  120
PLSALSTPPL ASEVKKWTID GTPLDPSSSE LSDLTTTGTR KSFFTTENFG GFTQQDGFKI  180
WKKAEIVRLD LEIGLVRDSK DELDLELRLG SLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-135178229superman protein
2l1o_A3e-135178229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G074500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8317590.0KC831759.1 Populus ussuriensis SUP1 (SUP1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315719.11e-155transcriptional regulator SUPERMAN
TrEMBLB9HUB81e-154B9HUB8_POPTR; Uncharacterized protein
TrEMBLM9W9Y81e-154M9W9Y8_9ROSI; SUP1
STRINGPOPTR_0010s08530.11e-112(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-17C2H2 family protein