PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G077000.3
Common NamePOPTR_0010s08760g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 220aa    MW: 24740.2 Da    PI: 8.6961
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G077000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.5e-0674123155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+  h + Er RR+r ++++  L +llP       +K +K +i ++A + I++L+
  Potri.010G077000.3  74 RCNRHMMSERLRRERERHGYLALHSLLPLG-----TKKDKNSIMQMAAKRIQELE 123
                         577899**********************97.....7999999**********995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-1170137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.97673122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-677140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-479128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MDGFFQDEWQ GDGFWNEIGP VNQGAFVPYI RRAGAGSESS SMGAHPTNMN KRMVEFMRRS  60
FPVNIGAQEP GSERCNRHMM SERLRRERER HGYLALHSLL PLGTKKDKNS IMQMAAKRIQ  120
ELETYKRILE RRNGEIEEKL AGSGIVNVES TKIRIEVANP TSGVDPMVDV LKCLKSLGAK  180
TRSIQSQISD QQLVAVMDIE TEIEAAEIEN AVKRTLARY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18287RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G077000.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024465178.11e-163transcription factor bHLH92 isoform X2
TrEMBLB9HUD71e-162B9HUD7_POPTR; Uncharacterized protein
STRINGPOPTR_0010s08760.11e-163(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.11e-33bHLH family protein