PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G083400.3
Common NamePOPTR_0010s09350g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CPP
Protein Properties Length: 630aa    MW: 69248.5 Da    PI: 5.3747
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G083400.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.22.4e-16440478240
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          +k+CnCkkskClk+YCeCfaag++C e C C+dC+Nk 
  Potri.010G083400.3 440 ACKRCNCKKSKCLKLYCECFAAGVYCIEPCACQDCFNKP 478
                         589**********************************96 PP
2TCR512.9e-16525563139
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                         ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Potri.010G083400.3 525 RHKRGCNCKKSTCLKKYCECYQGGVGCSINCRCEGCKNV 563
                         589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.4E-18439480IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.252440565IPR005172CRC domain
PfamPF036388.9E-12442477IPR005172CRC domain
SMARTSM011142.8E-18525566IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.9E-12527562IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MIFSLNFRSD SPVFNYINSL SPIKPVKSIN IAQTFHSLSF ASLPSVFTSP HVSSHKETRF  60
LKRHNYSDLS KPEFSSGNGN EVCKDEGVVV DAAQLYDNSA ELQENFDPGM SIGESSVEPP  120
SEHLKFATEL PQTLKYGCGS PDSRCGTQTD MVSESAGTSL SLVPFANEAS HKSFLESKKE  180
ATECDWESLI SDAADLLIFN SPIDADGFKE LFQKSPNPVV GFCTSFNEVH KTQIVNPFGS  240
GEQNEMGDPS TQPGETIELT QMDPTQDNLA ANEDPNKYMI SNASKAVSNL HRGMRRRCLD  300
FEKVGSRRKN MDDGSSSSSV LVQLDEKTTP KNTQLVPVKP GGDSSRCILP GIGLHLNALA  360
INSKDSKKIK LETFSSSITL PGSAASFNSR TTDQELDESL TLVSSERDND PNENVVPLVE  420
DFSQTSPKKK RRRLEGEPEA CKRCNCKKSK CLKLYCECFA AGVYCIEPCA CQDCFNKPIH  480
EDTVLATRKQ IESRNPLAFA PKVIRSSESA PEIRDESIKT PASARHKRGC NCKKSTCLKK  540
YCECYQGGVG CSINCRCEGC KNVFGRKDDF PNSGAASMEM EDEPEDETEA SVKNGVDKIL  600
QKTEIQNNDE QNPNSALPTT PLRFCRFTF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1744256312121Protein lin-54 homolog
5fd3_B3e-1744256312121Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1426433PKKKRRRL
2427432KKKRRR
3429433KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G083400.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175861e-138AC217586.1 Populus trichocarpa clone POP025-M11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315756.20.0protein tesmin/TSO1-like CXC 2
TrEMBLB9HUS40.0B9HUS4_POPTR; Uncharacterized protein
STRINGPOPTR_0010s09350.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.11e-140Tesmin/TSO1-like CXC domain-containing protein