PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G098100.1
Common NamePOPTR_0010s10840g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 62aa    MW: 6859.9 Da    PI: 10.22
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G098100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.53.1e-122371550
                        HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        kR+ ++ KKA+ELS+LC++ v vi   ++g + +++
  Potri.010G098100.1  2 KRLPTLKKKASELSILCGIPVRVISSWPDGIFDTWP 37
                        9**********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003191.4E-8136IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-10254IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 62 aa     Download sequence    Send to blast
NKRLPTLKKK ASELSILCGI PVRVISSWPD GIFDTWPENR NEVKTLVSEY KQAVVSTSSN  60
K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G098100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1YRL34e-36A0A2K1YRL3_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0010s10840.12e-35(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1711348
Representative plantOGRP6766218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02235.12e-14AGAMOUS-like 51