PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G098200.1
Common NamePOPTR_0010s10850g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 736aa    MW: 81192.5 Da    PI: 5.521
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G098200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.4e-08120142427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         +lC ff++ G+C  GdrC F+Hgp
  Potri.010G098200.1 120 VLCIFFQQ-GICLKGDRCAFSHGP 142
                         79******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8032554IPR000571Zinc finger, CCCH-type
PfamPF156631.4E-112680No hitNo description
SMARTSM003560.00182653IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.7465682IPR000571Zinc finger, CCCH-type
SMARTSM003560.0485881IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089116143IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5117142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6117141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4120142IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-5120142IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MVAATQPQPP TPTASTTTSA EEEALKRNTD CVYFLASPLT CKKGSECEYR HSEYARVNPR  60
DCYFWLNGNC MNPKCGFRHP PLDGLFGNQT TASAGSSLPP SHAAAAAATH APHNSGKQGV  120
LCIFFQQGIC LKGDRCAFSH GPNHASNRVS QTMAFTPGTE AHPPEKAFGG LQKCTQEQKL  180
PQVNLSKAVE PPTVAKPVSK AEIASARNSA GVARNVVPPK STDDEVPRYK SSNLPPEVNG  240
NSSRSNQLHL SRVADDHVNH NGKDADEYLR ESSPGFDVLV DDELRDSDYY HGEDQFGRTI  300
GHEGRNLNSV DEYDRGHPAD YGSLPDDQER YGDPRGYDPY EHMQGQHAWE QHRASSERML  360
VAPAHLERRG YSKADSPEHI EGSDLRYLLS KQRRVNGLRS VVSNDFVPGN HVEERGYQGS  420
SRRDSHHLLS HESPISSRLR GRIKLPGGSP NEGGDLHAER EIDRGRNRGR LSPVRSLISS  480
QQGRFRDRMK ARVEEDYNEG RNFRGPHVRR ELVDDKITNF AAPKRLAELR GGKNAEGKSQ  540
QSLGKRKYLE DHPPSDADLS FEGPMPLSEI LKRKRGGGAA ASGSRISSVI EDGNNQKESR  600
QSLTSNSNNK AVAETQSGFS SVLKDDDSSQ MLKNKESKFA TDDALGTEGG NIEIVHGKSS  660
QLPNPSEIET EDGMIADDGM EDHEYEGDDQ RDGDYEYEQA DEGEYNYEEG ENIDEEEYEN  720
EDGDDFAKKI GVVFS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.123090.0bud| catkin
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G098200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314739.20.0zinc finger CCCH domain-containing protein 17
TrEMBLB9HVM70.0B9HVM7_POPTR; Uncharacterized protein
STRINGPOPTR_0010s10850.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137
Representative plantOGRP24551220