PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G098200.2
Common NamePOPTR_0010s10850g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 697aa    MW: 77075.9 Da    PI: 5.5113
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G098200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.26e-0881103427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         +lC ff++ G+C  GdrC F+Hgp
  Potri.010G098200.2  81 VLCIFFQQ-GICLKGDRCAFSHGP 103
                         79******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.7461743IPR000571Zinc finger, CCCH-type
SMARTSM003560.0481942IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.08977104IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-578103IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.59E-678102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-481103IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-581103IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MVFSGSECEY RHSEYARVNP RDCYFWLNGN CMNPKCGFRH PPLDGLFGNQ TTASAGSSLP  60
PSHAAAAAAT HAPHNSGKQG VLCIFFQQGI CLKGDRCAFS HGPNHASNRV SQTMAFTPGT  120
EAHPPEKAFG GLQKCTQEQK LPQVNLSKAV EPPTVAKPVS KAEIASARNS AGVARNVVPP  180
KSTDDEVPRY KSSNLPPEVN GNSSRSNQLH LSRVADDHVN HNGKDADEYL RESSPGFDVL  240
VDDELRDSDY YHGEDQFGRT IGHEGRNLNS VDEYDRGHPA DYGSLPDDQE RYGDPRGYDP  300
YEHMQGQHAW EQHRASSERM LVAPAHLERR GYSKADSPEH IEGSDLRYLL SKQRRVNGLR  360
SVVSNDFVPG NHVEERGYQG SSRRDSHHLL SHESPISSRL RGRIKLPGGS PNEGGDLHAE  420
REIDRGRNRG RLSPVRSLIS SQQGRFRDRM KARVEEDYNE GRNFRGPHVR RELVDDKITN  480
FAAPKRLAEL RGGKNAEGKS QQSLGKRKYL EDHPPSDADL SFEGPMPLSE ILKRKRGGGA  540
AASGSRISSV IEDGNNQKES RQSLTSNSNN KAVAETQSGF SSVLKDDDSS QMLKNKESKF  600
ATDDALGTEG GNIEIVHGKS SQLPNPSEIE TEDGMIADDG MEDHEYEGDD QRDGDYEYEQ  660
ADEGEYNYEE GENIDEEEYE NEDGDDFAKK IGVVFS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.123090.0bud| catkin
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G098200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314739.20.0zinc finger CCCH domain-containing protein 17
TrEMBLB9HVM70.0B9HVM7_POPTR; Uncharacterized protein
STRINGPOPTR_0010s10850.10.0(Populus trichocarpa)