PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G112600.2
Common NamePOPTR_0010s12300g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 219aa    MW: 24435.7 Da    PI: 9.0729
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G112600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-1858112256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++keq + Lee F++++ ++ +++e LA +l+L  rqV vWFqNrRa+ k
  Potri.010G112600.2  58 RKKLRLSKEQSRLLEESFRQHHSLNPRQKEALALQLKLRPRQVEVWFQNRRARSK 112
                         788899***********************************************98 PP
2HD-ZIP_I/II1171.1e-3758146190
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                         +kk+rlskeq++lLEesF++++ L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr +
  Potri.010G112600.2  58 RKKLRLSKEQSRLLEESFRQHHSLNPRQKEALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELR-A 146
                         69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-1842112IPR009057Homeodomain-like
SuperFamilySSF466892.95E-1847115IPR009057Homeodomain-like
PROSITE profilePS5007116.74654114IPR001356Homeobox domain
SMARTSM003892.0E-1656118IPR001356Homeobox domain
CDDcd000868.72E-1657115No hitNo description
PfamPF000461.5E-1558112IPR001356Homeobox domain
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
SMARTSM003403.4E-22114157IPR003106Leucine zipper, homeobox-associated
PfamPF021831.1E-9114148IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MAVSRSSSSS LELTMSMPGV CAVKDFDINQ VPSGAAEEEW ISAGMEDEEE STDGAPPRKK  60
LRLSKEQSRL LEESFRQHHS LNPRQKEALA LQLKLRPRQV EVWFQNRRAR SKLKQTEMEC  120
EYLKRWFGSL TEQNRRLQRE VEELRALKVG PPTVISPHSR EPLPASTLTM CPRCERVTTT  180
GVDKGSTKTT RTAVANPTIA ATLSSENGAP ALQSRQSC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106114RRARSKLKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G112600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024465830.11e-147homeobox-leucine zipper protein HOX3
SwissprotQ0JKX18e-83HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH388e-83HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A2K1YSC31e-145A0A2K1YSC3_POPTR; Uncharacterized protein
STRINGPOPTR_0010s12300.11e-158(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.15e-71homeobox-leucine zipper protein 17