PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G125000.1
Common NamePOPTR_0010s13480g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 242aa    MW: 26491 Da    PI: 6.7369
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G125000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.27.3e-302103197
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C+++C+++p++      ++q++++ +++k++G++ +++l++a+p+  r++++ssl+yeA+ r+ +PvyG+vg+++++++ 
  Potri.010G125000.1   2 SCNGCRVLRKGCNDNCTIRPCLqwiksTDSQANATLFLAKFYGRAGLINLIEAAPQRLRPAIFSSLLYEACGRIVNPVYGSVGMLWSGNWA 92 
                         6*********************9998777889*********************************************************** PP

              DUF260  87 leqlkaelall 97 
                          +q++++++l 
  Potri.010G125000.1  93 QCQAAVDAVLK 103
                         ****9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.1711107IPR004883Lateral organ boundaries, LOB
PfamPF031956.6E-24299IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSCNGCRVLR KGCNDNCTIR PCLQWIKSTD SQANATLFLA KFYGRAGLIN LIEAAPQRLR  60
PAIFSSLLYE ACGRIVNPVY GSVGMLWSGN WAQCQAAVDA VLKGLPIISI PSSDVPTPHL  120
ISSLNTYDIR HVSRDQNSPE LNKVKSRTRC KRSIGTRPSS LAEPTGRLNQ GELGFEPVRE  180
SWLGHLGNGD SRIKDEDSIL AAENVEDSLW SRVEPDQVFK FNGQSDDSDL SLELTLALVS  240
E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146151RTRCKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G125000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314861.31e-177LOB domain-containing protein 41
SwissprotQ9CA301e-71LBD42_ARATH; LOB domain-containing protein 42
TrEMBLB9HWH61e-177B9HWH6_POPTR; Uncharacterized protein
STRINGPOPTR_0010s13480.11e-178(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.19e-74LOB domain-containing protein 42