PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G125600.1
Common NamePOPTR_0010s13540g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 343aa    MW: 38179.5 Da    PI: 4.5336
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G125600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.5e-17122170254
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                         +  GVr++k +g+W+AeIr p++   ++r +lg+f+t eeAa+a++a ++++e
  Potri.010G125600.1 122 KPVGVRQRK-WGKWAAEIRNPVT---KARTWLGTFDTLEEAAQAYEAKKQEYE 170
                         789*****9.**********654...5***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.42E-21121182No hitNo description
SMARTSM003802.2E-14122190IPR001471AP2/ERF domain
PfamPF008475.3E-12122171IPR001471AP2/ERF domain
PROSITE profilePS5103217.833122184IPR001471AP2/ERF domain
PRINTSPR003673.4E-7123134IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-15124169IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-19125166IPR001471AP2/ERF domain
PRINTSPR003673.4E-7145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MSPKRQSLLY TKTGNKTNDN KRILSQESKM ESTMRKIRVI CYDPYATESD SSDDESDKKS  60
SRKRFVREIN LPLVVTPQPK AFEPESSCQD SNNSAKSPGK KMRVLPETPT STFEAKKLAP  120
KKPVGVRQRK WGKWAAEIRN PVTKARTWLG TFDTLEEAAQ AYEAKKQEYE ALAMLASEKS  180
QNISSSLAIS QSHSHNSSKK QVSFASSGDS DDSVVSRTSP ASVLELDTSM VSNVTGECDL  240
VIKYEDIGSS VANLEIPDLD FMNDPLASCP IDQDLNLGLD FGNLIDEFGR FYDDYCVIDD  300
LDICGLNGEE PGELPDYDFE FGNEEFTYLD DHQQKPLNIA CQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G125600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315943.20.0ethylene-responsive transcription factor ERF119
TrEMBLB9HWI20.0B9HWI2_POPTR; Uncharacterized protein
STRINGPOPTR_0010s13540.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.23e-23ERF family protein