PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G128000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 238aa    MW: 26262.1 Da    PI: 9.1485
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G128000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.12.5e-10147197458
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                          k  rr+++NReAArr R+RKka++++Le+    L++  +    el++ +++v++
  Potri.010G128000.1 147 QKTLRRLAQNREAARRGRLRKKAYVQQLENSRLRLTQLEQ----ELQRARQQVQE 197
                         6889*************************98888877775....55566666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.0E-8141197No hitNo description
SMARTSM003381.3E-4144204IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415146197IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.0E-7148197No hitNo description
PfamPF001702.2E-7148191IPR004827Basic-leucine zipper domain
PROSITE patternPS000360151166IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MYCHSSFLLR NQTRLADLGK LHQPVPVSPH DDAVDLSSSN VTVVSHNLPY ATALNTSIGS  60
AEIATTGAGC LDTGQYVYQK GTGFDSSLGN GQSFENWGDS GMADNSLQTD TSTDVNTDDK  120
NQLRGVPHGA VMVVNSMDQS KGRTSDQKTL RRLAQNREAA RRGRLRKKAY VQQLENSRLR  180
LTQLEQELQR ARQQVQEVFS LSSRIFFIAS GFCGDHGRHS MDGNGKGFWI YQNRFRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160166RRGRLRK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the apical meristem, the floral meristem, each whorl of organ primordia, and in ovule primordia during wild-type flower development. {ECO:0000269|PubMed:9990857}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269|PubMed:19395638, ECO:0000269|PubMed:19395639, ECO:0000269|PubMed:9990857}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G128000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311449.21e-114transcription factor TGA2.2 isoform X1
RefseqXP_024462464.11e-114transcription factor TGA2.2 isoform X2
SwissprotQ9SX272e-42PAN_ARATH; Transcription factor PERIANTHIA
TrEMBLA0A1L6K4R41e-114A0A1L6K4R4_POPTO; Erianthia family protein
STRINGPOPTR_0008s11710.11e-114(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60223149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-34bZIP family protein
Publications ? help Back to Top
  1. Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU
    The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control.
    Front Plant Sci, 2011. 2: p. 79
    [PMID:22645551]
  2. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  3. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. de Luis Balaguer MA, et al.
    Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640
    [PMID:28827319]