PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G153100.2
Common NamePOPTR_0010s16290g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CAMTA
Protein Properties Length: 965aa    MW: 107650 Da    PI: 7.3612
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G153100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1181.59.6e-57221383118
                CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         +e k+rwl+++ei++iL n++k++lt+e++ rp  gs++L++rk +ryfrkDG+ w+kkkdgktvrE+hekLK g+v+vl+cyYah+e+n+
  Potri.010G153100.2  22 EEaKHRWLRPTEILEILRNYQKFKLTAEPPARPAAGSMFLFDRKALRYFRKDGHRWRKKKDGKTVREAHEKLKAGSVDVLHCYYAHGEDNE 112
                         4559*************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                         +fqrrcyw+L+ +le+iv+vhy+evk
  Potri.010G153100.2 113 NFQRRCYWMLDGQLEHIVFVHYREVK 138
                         ***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.70817143IPR005559CG-1 DNA-binding domain
SMARTSM010762.7E-8120138IPR005559CG-1 DNA-binding domain
PfamPF038592.4E-5023136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.7E-6404493IPR013783Immunoglobulin-like fold
PfamPF018336.9E-6405490IPR002909IPT domain
SuperFamilySSF812964.02E-16405491IPR014756Immunoglobulin E-set
PfamPF127961.5E-7585669IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.71E-16598701IPR020683Ankyrin repeat-containing domain
CDDcd002045.64E-16601698No hitNo description
Gene3DG3DSA:1.25.40.208.3E-17601730IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.523606638IPR002110Ankyrin repeat
SMARTSM00248890606635IPR002110Ankyrin repeat
PROSITE profilePS5029717.714606700IPR020683Ankyrin repeat-containing domain
SMARTSM002483.9E-4639668IPR002110Ankyrin repeat
PROSITE profilePS5008810.606639671IPR002110Ankyrin repeat
SMARTSM002483100678707IPR002110Ankyrin repeat
SuperFamilySSF525401.54E-8809864IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.45813835IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.627814843IPR000048IQ motif, EF-hand binding site
PfamPF006120.0042815834IPR000048IQ motif, EF-hand binding site
SMARTSM000155.1E-4836858IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.633837861IPR000048IQ motif, EF-hand binding site
PfamPF006127.0E-5840858IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 965 aa     Download sequence    Send to blast
MLMAETRRYI PDHTINIEQI LEEAKHRWLR PTEILEILRN YQKFKLTAEP PARPAAGSMF  60
LFDRKALRYF RKDGHRWRKK KDGKTVREAH EKLKAGSVDV LHCYYAHGED NENFQRRCYW  120
MLDGQLEHIV FVHYREVKEG YKSGVSRLLE DSGTQVENLQ PSPVTSFAQA ASPASTVQTS  180
YASSPNRIDW NGKALSSEFE DVDSRNGPGT SSLAQSIHGS MSHNSSLLSP RVEAKFDLGT  240
QSSLLPEISS SERSVSRLPG QKFFVDQPGG AEFITNKLTD ATLEGIAVPD TVELDFNLIS  300
PQLHNLSGTQ TVAASTAQVE NKANDGGANN IESGELKKLD SFGRWMDKEI GGDCDDSLMA  360
SDSGNYWSTL SAENEDKEVS SLSHHMQLDT DSLGPSLSQD QLFSIRDFSP DWAYSGVDTK  420
VLIIGTFLGS KKFSSETKWG CMFGEIEVSA EVLNDCVIRC QVPQHAPGRV PFYITCRNRL  480
SCSEVREFEY RENPFGTASL PAESAQQEEI LFQMRLSKLL YLGPGMKSSN CSIEDCERCK  540
ISTLFSLRND SKRDLGKVQD NCMVAVGDGI GFRDKLIQSL LMDRLCEWLA CKVHEGGKGS  600
DVLDGEGQGV IHLAASLGYE WAMDLIVAAG GNPNFRDARG RTALHWASYF GREETVIALI  660
RLDADPTAVD DPNPAFPGGQ SAADLASCRG HKGISGYLAE AFLSRHLSSL KIDQNEMDHD  720
TAAMAAEKET DIAAQVASLS SKGEYELLSL KGSLAAVRKS ARAVALIHAA YRTSSFRQRQ  780
LAKSSDDISE ISLDLAALGS LNMVQRRGHF EDYLHSAAVK IQQKYRGWKG RKDFLKIRNR  840
IVKIQAHVRG HQVRKQYKKV VWSVGIVEKA ILRWRRKRTG LRGFRLEKKI GDVKPESENA  900
DEYDFLRISR KQKFAGVEKA LARVTSMVRH PEAREQYMRM VTKFENIKMG DEGCSVSQQD  960
ESSR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G153100.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466825.10.0calmodulin-binding transcription activator 3 isoform X4
TrEMBLA0A2K1YUI60.0A0A2K1YUI6_POPTR; Uncharacterized protein
STRINGPOPTR_0010s16290.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.10.0ethylene induced calmodulin binding protein