PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G153100.5
Common NamePOPTR_0010s16290g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CAMTA
Protein Properties Length: 990aa    MW: 110243 Da    PI: 7.7385
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G153100.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1181.51e-56201363118
                CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         +e k+rwl+++ei++iL n++k++lt+e++ rp  gs++L++rk +ryfrkDG+ w+kkkdgktvrE+hekLK g+v+vl+cyYah+e+n+
  Potri.010G153100.5  20 EEaKHRWLRPTEILEILRNYQKFKLTAEPPARPAAGSMFLFDRKALRYFRKDGHRWRKKKDGKTVREAHEKLKAGSVDVLHCYYAHGEDNE 110
                         4559*************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                         +fqrrcyw+L+ +le+iv+vhy+evk
  Potri.010G153100.5 111 NFQRRCYWMLDGQLEHIVFVHYREVK 136
                         ***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.70815141IPR005559CG-1 DNA-binding domain
SMARTSM010762.7E-8118136IPR005559CG-1 DNA-binding domain
PfamPF038592.5E-5021134IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.8E-6437526IPR013783Immunoglobulin-like fold
SuperFamilySSF812964.2E-16438524IPR014756Immunoglobulin E-set
PfamPF018337.1E-6438523IPR002909IPT domain
PfamPF127961.6E-7618702IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.71E-16631734IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.1E-17634763IPR020683Ankyrin repeat-containing domain
CDDcd002045.86E-16634731No hitNo description
PROSITE profilePS500888.523639671IPR002110Ankyrin repeat
SMARTSM00248890639668IPR002110Ankyrin repeat
PROSITE profilePS5029717.714639733IPR020683Ankyrin repeat-containing domain
SMARTSM002483.9E-4672701IPR002110Ankyrin repeat
PROSITE profilePS5008810.606672704IPR002110Ankyrin repeat
SMARTSM002483100711740IPR002110Ankyrin repeat
SuperFamilySSF525401.59E-8842897IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.45846868IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.627847876IPR000048IQ motif, EF-hand binding site
PfamPF006120.0043848867IPR000048IQ motif, EF-hand binding site
SMARTSM000155.1E-4869891IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.633870894IPR000048IQ motif, EF-hand binding site
PfamPF006127.2E-5873891IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 990 aa     Download sequence    Send to blast
MAETRRYIPD HTINIEQILE EAKHRWLRPT EILEILRNYQ KFKLTAEPPA RPAAGSMFLF  60
DRKALRYFRK DGHRWRKKKD GKTVREAHEK LKAGSVDVLH CYYAHGEDNE NFQRRCYWML  120
DGQLEHIVFV HYREVKEGYK SGVSRLLEDS GTQVENLQPS PVTSFAQAAS PASTVQTSYA  180
SSPNRIDWNG KALSSEFEDV DSRNGPGTSS LAQSIHGSMS HNSSLLSPRV EGFHVLPKNP  240
PGSWLAGAKF DLGTQSSLLP EISSSERSVS RLPGQKFFVD QPGGAEFITN KLTDATLEGI  300
AVPDTVVSAT GLITDRTATP QNVIQELDFN LISPQLHNLS GTQTVAASTA QVENKANDGG  360
ANNIESGELK KLDSFGRWMD KEIGGDCDDS LMASDSGNYW STLSAENEDK EVSSLSHHMQ  420
LDTDSLGPSL SQDQLFSIRD FSPDWAYSGV DTKVLIIGTF LGSKKFSSET KWGCMFGEIE  480
VSAEVLNDCV IRCQVPQHAP GRVPFYITCR NRLSCSEVRE FEYRENPFGT ASLPAESAQQ  540
EEILFQMRLS KLLYLGPGMK SSNCSIEDCE RCKISTLFSL RNDSKRDLGK VQDNCMVAVG  600
DGIGFRDKLI QSLLMDRLCE WLACKVHEGG KGSDVLDGEG QGVIHLAASL GYEWAMDLIV  660
AAGGNPNFRD ARGRTALHWA SYFGREETVI ALIRLDADPT AVDDPNPAFP GGQSAADLAS  720
CRGHKGISGY LAEAFLSRHL SSLKIDQNEM DHDTAAMAAE KETDIAAQVA SLSSKGEYEL  780
LSLKGSLAAV RKSARAVALI HAAYRTSSFR QRQLAKSSDD ISEISLDLAA LGSLNMVQRR  840
GHFEDYLHSA AVKIQQKYRG WKGRKDFLKI RNRIVKIQAH VRGHQVRKQY KKVVWSVGIV  900
EKAILRWRRK RTGLRGFRLE KKIGDVKPES ENADEYDFLR ISRKQKFAGV EKALARVTSM  960
VRHPEAREQY MRMVTKFENI KVMLYSSEP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G153100.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466825.10.0calmodulin-binding transcription activator 3 isoform X4
TrEMBLA0A2K1YUG00.0A0A2K1YUG0_POPTR; Uncharacterized protein
STRINGPOPTR_0010s16290.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1