PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G154100.4
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 179aa    MW: 20681.4 Da    PI: 9.5498
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G154100.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.89.1e-31959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  Potri.010G154100.4  9 KRIENKINRQVTFSKRRTGLLKKANEISVLCDAEVALIVFSHKGKLFEYST 59
                        79***********************************************96 PP
2K-box93.14.7e-3178168494
               K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                         ++ ++++   + +++ e+++Lk+++e Lqr++R++lGedL+s+slkeLq+Leqq++++lk+iR++Kn+l+ ++i+elq+k k ++++++  
  Potri.010G154100.4  78 RQLVATDLDSQGNWTLEYNRLKAKVELLQRNHRNYLGEDLDSMSLKELQNLEQQIDTALKHIRARKNHLMSQSISELQRKVKGNSSAKQHV 168
                         5555555666789********************************************************************9988887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.3E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.127161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-34291IPR002100Transcription factor, MADS-box
CDDcd002658.42E-40279No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-31323IPR002100Transcription factor, MADS-box
PfamPF003195.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-2586163IPR002487Transcription factor, K-box
PROSITE profilePS5129714.7688174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRTGLLK KANEISVLCD AEVALIVFSH KGKLFEYSTD  60
DSMEKILERY ERYSYAERQL VATDLDSQGN WTLEYNRLKA KVELLQRNHR NYLGEDLDSM  120
SLKELQNLEQ QIDTALKHIR ARKNHLMSQS ISELQRKVKG NSSAKQHVSE ADQGEGEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-23185184MEF2 CHIMERA
6byy_B1e-23185184MEF2 CHIMERA
6byy_C1e-23185184MEF2 CHIMERA
6byy_D1e-23185184MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.120040.0bud| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G154100.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6159660.0AY615966.1 Populus balsamifera subsp. trichocarpa APETALA1-like MADS-box PTAP1-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316076.11e-111truncated transcription factor CAULIFLOWER A isoform X1
RefseqXP_024466010.11e-111truncated transcription factor CAULIFLOWER A isoform X2
SwissprotQ6E6S71e-95AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLQ6IWY21e-109Q6IWY2_POPTR; APETALA1-like MADS-box PTAP1-2
STRINGcassava4.1_029935m1e-97(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.13e-94MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]