PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G181000.1
Common NamePOPTR_0010s18840g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 720aa    MW: 78657.8 Da    PI: 6.5078
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G181000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.58.9e-15286345155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Potri.010G181000.1 286 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 345
                         57*******************666664478446*************************98 PP
2AP246.68.3e-15388439155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Potri.010G181000.1 388 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 439
                         57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.56E-17286354IPR016177DNA-binding domain
CDDcd000184.02E-20286355No hitNo description
PfamPF008471.4E-11286345IPR001471AP2/ERF domain
PROSITE profilePS5103219.164287353IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-15287353IPR001471AP2/ERF domain
SMARTSM003803.8E-29287359IPR001471AP2/ERF domain
PRINTSPR003673.9E-6288299IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17388449IPR016177DNA-binding domain
CDDcd000181.40E-24388449No hitNo description
PfamPF008471.0E-9388439IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-18389448IPR001471AP2/ERF domain
PROSITE profilePS5103219.045389447IPR001471AP2/ERF domain
SMARTSM003801.5E-33389453IPR001471AP2/ERF domain
PRINTSPR003673.9E-6429449IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MASMNNWLGF SLSHQELPSS QSDHHQDHSQ NTDSRLGFHS DEISGTNVSG ECFDLTSDST  60
APSLNLPATF GILEAFRNNQ PQDWNMKSLG MNPDTNYKTA SGLPIFMGTS CNSQTIDQNQ  120
EPKLENFLGG HSFGNHEHKL NGCNTMYDTT GDYVFQNCSL QLPSEATSNE RTSNNGGGDN  180
KNSSIGLSMI KTWLRNQPAP TQQDTNNKNN GGAQSLSLSM STGSQSAASA LPLLAVNGGV  240
NNTGGDQSSS DNNKQQKSTT PSLDSQTGAI ESVPRKSIDT FGQRTSIYRG VTRHRWTGRY  300
EAHLWDNSCR REGQTRKGRQ VYLGGYDKEE KAARAYDLAA LKYWGTTTTT NFPITNYEKE  360
IEEMKHMTRQ EYVASLRRKS SGFSRGASIY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF  420
STQEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVNSILESS TLPIGGAAKR LKEAEHAEIA  480
MDIAQRTDDH DNMGSQLTDG ISSYGAVQHG WPTVAFQQAQ PFSMHYPYGQ RLWCKQEQDS  540
DNRSFQELHQ LQLGNTHNFF QPSVLHNLVS MDSSSMEHSS GSNSVVYSSG VNDGTSTGTN  600
GGYQGIGYGS SAGYAVPMAT VISNNDNNHN QGNGYGDGDQ VKALGYENMF SPSDPYHARN  660
LHYLSQQPSA GGIKASAYDQ GSACYNWVPT AVPTIAAARS NNMAVCHGAQ PFTVWNDGT*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}.
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G181000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316179.20.0AP2-like ethylene-responsive transcription factor BBM2
SwissprotQ8LSN21e-150BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLB9HYI00.0B9HYI0_POPTR; Uncharacterized protein
STRINGPOPTR_0010s18840.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-131AP2 family protein