PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G186600.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 134aa    MW: 14618.4 Da    PI: 6.9331
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G186600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.83.3e-102962843
                        HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
     Myb_DNA-binding  8 EdellvdavkqlGggtWktIartmgkgRtlkqcksr 43
                        Ed ++v+++++ G++ W+tIar ++ gRt+  +k++
  Potri.010G186600.1 29 EDAKIVQVHALRGNK-WATIARLLP-GRTDDAIKDH 62
                        9**************.*********.*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001671.65E-5162No hitNo description
PROSITE profilePS512949.2641473IPR017930Myb domain
SuperFamilySSF466894.32E-72865IPR009057Homeodomain-like
PfamPF002491.6E-72962IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-112962IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
PQEDATLIKL LEQHGPLRRG ATSSIMLTED AKIVQVHALR GNKWATIARL LPGRTDDAIK  60
DHRNSTGWFH FNACGGESGG GFGSRGQRKG PGDGEERCTG ETDETCLRAI MQKMMQEEAR  120
IYFDGFKGNL ENG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G186600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000247.13e-19PREDICTED: transcription factor MYB44-like
TrEMBLA0A2K1YWD04e-94A0A2K1YWD0_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0010s19390.11e-34(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-12myb domain protein 73