PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.010G186700.1

Common Name

POPTR_0010s19400g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 260aa MW: 28581.2 Da PI: 6.9964

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.010G186700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.5	5.8e-14	69	115	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E+rRRdriN + Lr+l+Pk+ +K++Ka+ L A++++k+L Potri.010G186700.1 69 KSHSQAEKRRRDRINAQLGILRKLVPKS-----EKMDKAALLGSAIDHVKDL 115 79***********************8.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.574	66	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.77E-14	68	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-11	69	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-15	69	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-12	72	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.06E-10	74	118	No hit	No description
SuperFamily	SSF55021	8.24E-5	159	229	No hit	No description
Gene3D	G3DSA:3.30.70.260	3.3E-5	161	225	No hit	No description
CDD	cd04873	1.71E-6	162	198	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MEDHYSPCWP AAPAEANWDQ TSAAVYDESF LVPCPSHASA SANFQVYGFP SWSVPLQEAS 60 EDKAASSSKS HSQAEKRRRD RINAQLGILR KLVPKSEKMD KAALLGSAID HVKDLKQKAT 120 EISRTFTIPT EVDEVTVDCD VSQVTSPPST NKDKDNTFIR ASVCCDDRPE LFSELITVLK 180 GLRLTIVRAD IASVGGRVKS ILVLCSECSE EGSVSISTIK QSLNLVLSRI ASSSVPSNYR 240 IRSKRQRFFL PSHLSEQYE*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.010G186700.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002316199.1	0.0	transcription factor bHLH51
Swissprot	Q9XEF0	4e-46	BH051_ARATH; Transcription factor bHLH51
TrEMBL	B9HSL8	0.0	B9HSL8_POPTR; BHLH family protein
STRING	POPTR_0010s19400.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5796	33	51
Representative plant	OGRP377	15	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	1e-38	bHLH family protein

Link Out ? help Back to Top
Phytozome	Potri.010G186700.1
Entrez Gene	7490321

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]