PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G188700.1
Common NamePOPTR_0010s19600g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-X1
Protein Properties Length: 891aa    MW: 99754.4 Da    PI: 8.4128
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G188700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X124.74.9e-08254271118
            zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                         CG+H+C+++CH GpCppC
  Potri.010G188700.1 254 CGIHSCKQICHDGPCPPC 271
                         ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.77E-587170No hitNo description
PROSITE profilePS500898.84590157IPR001841Zinc finger, RING-type
PROSITE patternPS01359090156IPR019786Zinc finger, PHD-type, conserved site
CDDcd060083.04E-6190238No hitNo description
PfamPF014220.92202219IPR000967Zinc finger, NF-X1-type
SMARTSM004384.6202220IPR000967Zinc finger, NF-X1-type
CDDcd060087.56E-8244284No hitNo description
PfamPF014224.2E-6254271IPR000967Zinc finger, NF-X1-type
SMARTSM004385.1E-5254273IPR000967Zinc finger, NF-X1-type
CDDcd060081.48E-7299340No hitNo description
PfamPF014220.082307325IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0013307326IPR000967Zinc finger, NF-X1-type
CDDcd060087.50E-9351400No hitNo description
PfamPF014220.033361380IPR000967Zinc finger, NF-X1-type
SMARTSM004380.66361381IPR000967Zinc finger, NF-X1-type
CDDcd060084.08E-8404452No hitNo description
PfamPF014220.0055414431IPR000967Zinc finger, NF-X1-type
SMARTSM004380.15414433IPR000967Zinc finger, NF-X1-type
CDDcd060081.08E-10431479No hitNo description
PfamPF014220.0063435459IPR000967Zinc finger, NF-X1-type
SMARTSM004380.023441460IPR000967Zinc finger, NF-X1-type
SMARTSM0043848498519IPR000967Zinc finger, NF-X1-type
PfamPF014224.9508518IPR000967Zinc finger, NF-X1-type
PfamPF014220.15609619IPR000967Zinc finger, NF-X1-type
SMARTSM0043828609643IPR000967Zinc finger, NF-X1-type
CDDcd060081.53E-4641682No hitNo description
SMARTSM004380.0032653671IPR000967Zinc finger, NF-X1-type
PfamPF014220.024654670IPR000967Zinc finger, NF-X1-type
SMARTSM004385.1716737IPR000967Zinc finger, NF-X1-type
PfamPF0142218717730IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 891 aa     Download sequence    Send to blast
MSSALGYHHH HHLQQEQQQQ QQKPFSDSDS YSDSDSDTTN SQNQHSADLT NSIFKSYFEH  60
ANHQSLQPTQ HDLTKIKSFL TSSSSGALSC LICLERIKTS DPTWSCTSLC YAVFHLICIQ  120
SWARQASDLS ALRASTRLPI SSDKAAESST WNCPKCRSDY SRSKIPRNYL CFCGKVENPP  180
NDPWILSHSC GEICNRQLKN NCGHCCLLLC HPGPCPSCPK LVKATCFCGK TTDVKRCGYK  240
LFSCNNICKK SLDCGIHSCK QICHDGPCPP CNARGVYKCS CGRKVEEREC CEREFRCENP  300
CEKLLACGKH VCERGCHFGE CGDCPLQGKR ACPCGKRLYE GMACDIVVPL CGGTCDKMLS  360
CGFHRCHERC HRGPCIETCR IVVTKLCRCG GMKKEVPCYQ DLACERKCQR MRDCGRHACK  420
RRCCDGDCPP CGEICGKRLR CKNHKCPAPC HRGACSPCPV MFTISCACGE THFEVPCGTE  480
KDQKPPKCRK SCGISPLCRH GSDSKPHKCH YGACPPCRLL CDEEYPCSHK CKLRCHGPRP  540
PPNPDFTLRP KKKKPNHQSE STPGTPCPPC PELVWRPCLG QHIGAERMMV CSNRTQFSCE  600
NLCGSPLSCG NHYCTKTCHA LKSQSSTSLV QHKRSESCEE CHLPCEKERK PACRHSCPLP  660
CHPGDCPPCK VLVKRSCYCG SMVHVFECIY YNNLSEKEQM AARSCGGSCH RKLPNCTHLC  720
PKTCHPGQCP SPDKCAKKVT VRCQCQTLKK EMPCQEVQAA YHKAGSDPKD ISKSHFGLGL  780
LPCNSGCKSK AQVVDQELHL RKSKDLEEKV PATEIHPPKR RKRREHLQET KKTSQLQKIA  840
ATMKWLLVIV TLMVTMVAAA YFGYKGLIWL SDWMNEVEEQ QRHRRRHPRI *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1817823PKRRKRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G188700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT1647280.0KT164728.1 Populus tomentosa clone Potom.008G20580 zinc finger family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316211.10.0NF-X1-type zinc finger protein NFXL2 isoform X1
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLB9HSN70.0B9HSN7_POPTR; NF-X1 family protein
STRINGPOPTR_0010s19600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Representative plantOGRP63251718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors