PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G191500.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 382aa    MW: 43891.7 Da    PI: 8.9977
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G191500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.62e-1728118198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffk+  ps  lk + l++p+kf+e++g  +  s   ++  ++g++W+v +  +k  + +++ +GW+eFv+ + + +g  vvF++ g+s+f 
  Potri.010G191500.1  28 FFKIVFPST-LKDKKLRIPRKFVEKFG--EGLSDIAKVAVPNGNEWQVGI--TKEHNNIWFDEGWQEFVEHHSIGSGYLVVFRYRGDSNF- 112
                         778776655.55556***********8..4478899**************..********************************999999. PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                           v +f+
  Potri.010G191500.1 113 -SVLIFD 118
                         .888886 PP
2B367.22.3e-21281371497
                         E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                         v+++ +++ ++ l++p +fa++h ++ ++   ++l+ ++gr+W +++  +++++r   ++kGW+eF ++n+LkegD++vF+l+++++f l+
  Potri.010G191500.1 281 VMLRRYNFYNHFLYVPLEFAQRHLSDAPR--CIKLQVSDGREWPIQI--NRNQCRyLSISKGWNEFSQENNLKEGDVCVFELINKEKFVLK 367
                         6778999****************555444..49999999********..99999956799***********************99***999 PP

                         EEEE CS
                  B3  94 vkvf 97 
                         v +f
  Potri.010G191500.1 368 VAIF 371
                         9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-2520122IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-2221122IPR015300DNA-binding pseudobarrel domain
CDDcd100171.46E-1727118No hitNo description
PROSITE profilePS5086313.33827120IPR003340B3 DNA binding domain
PfamPF023629.6E-1528118IPR003340B3 DNA binding domain
SMARTSM010191.0E-1528120IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.4E-24271372IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-21274379IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-18277371No hitNo description
PROSITE profilePS5086314.847278374IPR003340B3 DNA binding domain
SMARTSM010191.6E-16279374IPR003340B3 DNA binding domain
PfamPF023623.0E-20280371IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MSSRKEGGPS RSRDLRSHSQ IESPLCHFFK IVFPSTLKDK KLRIPRKFVE KFGEGLSDIA  60
KVAVPNGNEW QVGITKEHNN IWFDEGWQEF VEHHSIGSGY LVVFRYRGDS NFSVLIFDMT  120
ACEIQYRRMR PTGGEGMNDA EKCSFYDEDE MKDEGSVESL DTHYCRALKS RVFNLNAREG  180
GSSKGRGPSS ETTVKNEMTY IDDTSESRRG KSLKKHRMSA PHGETKAKKS KSKSRLGENE  240
LLPECEAIEF VPRGFAKASE KSKRAIHAAR MFKPKSPSFM VMLRRYNFYN HFLYVPLEFA  300
QRHLSDAPRC IKLQVSDGRE WPIQINRNQC RYLSISKGWN EFSQENNLKE GDVCVFELIN  360
KEKFVLKVAI FHELEDNVPS D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-2225837228141B3 domain-containing transcription factor VRN1
4i1k_B2e-2225837228141B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G191500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315168.20.0B3 domain-containing transcription factor VRN1
RefseqXP_024465036.10.0B3 domain-containing transcription factor VRN1
TrEMBLA0A2K1YWN80.0A0A2K1YWN8_POPTR; Uncharacterized protein
STRINGPOPTR_0010s19890.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1642569
Representative plantOGRP20511436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-58B3 family protein