PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G200400.1
Common NamePOPTR_0010s20800g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 219aa    MW: 24206.3 Da    PI: 4.9638
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G200400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.31.5e-3971071100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+++Cv+apyf+ +q +++fa+vhk+FGasnv+kll +lp ++r da+ ++ yeA ar+rdP+yG+v++i++lqqq+++l
  Potri.010G200400.1   7 SCGACKFLRRKCTSECVFAPYFCYDQaAAHFAAVHKVFGASNVSKLLLHLPVHNRGDAAITISYEALARMRDPIYGCVAHIFALQQQVASL 97 
                         6************************978*************************************************************** PP

              DUF260  91 kaelallkee 100
                         ++e++ l+++
  Potri.010G200400.1  98 QEEIEILENQ 107
                         *****99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.3476108IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-377104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MTGLGSSCGA CKFLRRKCTS ECVFAPYFCY DQAAAHFAAV HKVFGASNVS KLLLHLPVHN  60
RGDAAITISY EALARMRDPI YGCVAHIFAL QQQVASLQEE IEILENQMAS LTVGVAGFGS  120
SPTISNPNCE MLFSFQQDAM NTQYYQNPQS AQLNHSGYTT GNQTFDGQMN VPLTPLYGWE  180
DQDIFCNSHP RPLERLLEEV DKEIFTYCSW PDSGNIII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-3531177120LOB family transfactor Ramosa2.1
5ly0_B4e-3531177120LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G200400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316271.21e-166LOB domain-containing protein 29
SwissprotQ9LHS82e-57LBD33_ARATH; LOB domain-containing protein 33
TrEMBLB9HT791e-164B9HT79_POPTR; Uncharacterized protein
STRINGPOPTR_0010s20800.11e-165(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.13e-48LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]