PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G208600.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 207aa    MW: 23181.6 Da    PI: 9.8639
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G208600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.10.000361111501155
                         HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         rR +++ +++  L++l+ +      +K + a++L +A  +Ik Lq
  Potri.010G208600.1 111 RRSQKLSDKITALQKLVSPY-----GKADTASVLLEASLHIKLLQ 150
                         7999**************99.....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.2E-796169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.483100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-8111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MACLPCLVAG YQSVSSTCSN IPQQSMLLSK GVSITEVQMD FQAMQMRKRS IDELTNLLPQ  60
REPSDLIENK TALSTWKTNK RKKANSPEEP WNHQARESIS IQEQKLQVPV RRSQKLSDKI  120
TALQKLVSPY GKADTASVLL EASLHIKLLQ EQIQNLFQML TSSRNSTRPI QQSQEADGEL  180
RDLQSRGLCL VPRSFMLKND SAARPS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G208600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0295231e-137CT029523.1 Poplar cDNA sequences.
GenBankCT0295241e-137CT029524.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024467024.11e-150transcription factor bHLH113 isoform X1
TrEMBLA0A2K1YXN11e-148A0A2K1YXN1_POPTR; Uncharacterized protein
STRINGPOPTR_0010s21570.11e-118(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133551522
Representative plantOGRP1507223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.15e-22bHLH family protein