PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G209400.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 180aa    MW: 20060 Da    PI: 8.9248
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G209400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00154769123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C++ F++   L  H  +H
  Potri.010G209400.1 47 FECKTCNRQFPSFQALGGHRASH 69
                        89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.69E-945114No hitNo description
PfamPF139122.9E-134671IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8274774IPR007087Zinc finger, C2H2
SMARTSM003550.164769IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
PfamPF139126.3E-1091116IPR007087Zinc finger, C2H2
PROSITE profilePS501578.91292114IPR007087Zinc finger, C2H2
SMARTSM003550.592114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MKRGLHEREI DSITMANCLM FLSKGRESYS FPSFDHAMSN ISPARVFECK TCNRQFPSFQ  60
ALGGHRASHK KPRLMGGEGS FETQSPAKPK THECSICGLE FAIGQALGGH MRRHRAALND  120
RNQVDPLNPP STDDQKAVPV VKRSNSRRVL CLDLNLTPYE NDMELFKLGT TAPMVNCFF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.109950.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G209400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN7005230.0JN700523.1 Populus trichocarpa C2H2-type zinc finger protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024465761.11e-133zinc finger protein ZAT11
TrEMBLG8IEK91e-131G8IEK9_POPTR; C2H2 family protein
STRINGPOPTR_0010s21650.11e-121(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.19e-40C2H2 family protein
Publications ? help Back to Top
  1. Hamel LP, et al.
    Stress-responsive mitogen-activated protein kinases interact with the EAR motif of a poplar zinc finger protein and mediate its degradation through the 26S proteasome.
    Plant Physiol., 2011. 157(3): p. 1379-93
    [PMID:21873571]