PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G216200.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 256aa    MW: 29051.1 Da    PI: 8.2277
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G216200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.62.3e-11167200139
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgta 39 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta
  Potri.010G216200.2 167 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTA 200
                         78*******************......55*********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.12E-6167201IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-5168201IPR001471AP2/ERF domain
PROSITE profilePS510329.111168201IPR001471AP2/ERF domain
SMARTSM003801.5E-4168226IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MLDLNLGISS SDSCCEDNNK NNMMVIVDVE NHQEEEEAAS RTQQMEDSAT SNSSITNTTE  60
DENSSNNSNS AFIFDILKKD GNFTNTSAIN ASKETSRNCD FTTQQLFPES TGLELNFQPG  120
LAVASAARPQ WLKLSQMGSS PEAEPENVQQ KQQQARKSRR GPRSRSSQYR GVTFYRRTGR  180
WESHIWDCGK QVYLGGFDTA HHIWACKPFM VHQWHQRTFQ HGLAYTLVYY QATRKGLQRR  240
RLKLFLHRDS QAGRG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G216200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466942.11e-144floral homeotic protein APETALA 2 isoform X2
TrEMBLA0A2I4KL101e-143A0A2I4KL10_POPTR; AP2 family protein
TrEMBLB9HU091e-143B9HU09_POPTR; Uncharacterized protein
STRINGPOPTR_0010s22320.11e-144(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39250.15e-17AP2 family protein