PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G251600.1
Common NamePOPTR_0010s25810g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 308aa    MW: 33369.7 Da    PI: 8.0639
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G251600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.11.9e-16231267135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  Potri.010G251600.1 231 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKGT 267
                         *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.64484119IPR010399Tify domain
SMARTSM009797.0E-1084119IPR010399Tify domain
PfamPF062001.5E-1087118IPR010399Tify domain
PROSITE profilePS5101713.205155197IPR010402CCT domain
PfamPF062036.6E-16155197IPR010402CCT domain
PROSITE profilePS501148.748225273IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-12225278IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.14E-12226277No hitNo description
CDDcd002024.99E-14230273No hitNo description
Gene3DG3DSA:3.30.50.101.7E-15230272IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.1E-14231267IPR000679Zinc finger, GATA-type
PROSITE patternPS003440231258IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MMDGINGSNI SARMQTSTEA QNPSMQMHYD HHQNHQNGIQ MMNNANGMIM NSGDNDQDHN  60
GVVNGGGDDD DHGGTMMVAA DNHGKENGDQ LTLTFQGQVY VFDSVSPGKV QAVLLLLGGR  120
EVPAASTPTV PITTHHNSNN RGLSGTPQRF SVPQRLASLI RFREKRKERN FDKKIRYTVR  180
KEVALRMQRN KGQFTSSKPN HDDSASAATS WGSNESGGSD SNGSQHQEAI CRHCGISEKS  240
TPMMRRGPEG PRTLCNACGL MWANKGTLRD LSKAAPHTGP SSSSMNSNAM DGNTDGNQRV  300
AWNNDFS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G251600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316441.20.0GATA transcription factor 28
SwissprotQ8H1G01e-110GAT28_ARATH; GATA transcription factor 28
TrEMBLB9HV290.0B9HV29_POPTR; Uncharacterized protein
STRINGPOPTR_0010s25810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136512325
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-102ZIM-LIKE 2