PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G004900.1
Common NamePOPTR_0021s00570g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 123aa    MW: 14287.6 Da    PI: 10.8548
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G004900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.62.9e-10990483
                        E-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEE CS
                  B3  4 vltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFk 83
                           +++  +++r+ lpk+ + ++    g+  + +  + +d+ gr+W +k+++r+ ++    ++++ W+++++++gLk gD v + 
  Potri.011G004900.1  9 SV-SKSDATNNRMELPKESLGNFpipAGQ--NYFNFVAMDTLGRRWGFKVSIRNVGRYkkPWMSGQWRRYAQEKGLKKGDRVKLI 90
                        44.455556678********777877444..4578999************984444334599******************88765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.0655107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-12690IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-10791IPR015300DNA-binding pseudobarrel domain
CDDcd100171.97E-118113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MEEVAMEKSV SKSDATNNRM ELPKESLGNF PIPAGQNYFN FVAMDTLGRR WGFKVSIRNV  60
GRYKKPWMSG QWRRYAQEKG LKKGDRVKLI MQVEGNAVRS YRIRAERNLT MRIWIPVEEF  120
AI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G004900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011016151.14e-77PREDICTED: uncharacterized protein LOC105119681
TrEMBLU7DZS03e-84U7DZS0_POPTR; Uncharacterized protein
STRINGPOPTR_0021s00570.14e-85(Populus trichocarpa)