PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G005300.1
Common NamePOPTR_0021s00530g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 156aa    MW: 18200 Da    PI: 9.3876
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G005300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.94.8e-106100395
                         EE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                         k+l +++  k++rl +p + ++++   +g+  +s++ +  d +  +W++k+++r+ ++    +l++ W ++v+++gLk gD v++++d+++
  Potri.011G005300.1   6 KIL-SESDAKNKRLEFPARSLSAFpmpDGQ--NSVQFVAFDMQEHQWRLKVSIRNEGRYpkPWLKGEWHDYVHQKGLKKGDKVILTMDEEE 93 
                         555.455566778********999866444..677888889999*******99888877889************************99887 PP

                         EE..EEE CS
                  B3  89 efelvvk 95 
                         ++e   +
  Potri.011G005300.1  94 NGERIYR 100
                         7765555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.8683105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.3E-13499IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.61E-9594IPR015300DNA-binding pseudobarrel domain
CDDcd100171.98E-12693No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MEVMNKILSE SDAKNKRLEF PARSLSAFPM PDGQNSVQFV AFDMQEHQWR LKVSIRNEGR  60
YPKPWLKGEW HDYVHQKGLK KGDKVILTMD EEENGERIYR IRAEKKHFGF CGYSSNMFDK  120
NIPLTIIFKH LVKGTCMSEQ SNIVHSYMIV FNNIV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G005300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011016495.12e-76PREDICTED: uncharacterized protein LOC105119999, partial
TrEMBLU7E3151e-113U7E315_POPTR; Uncharacterized protein
STRINGPOPTR_0021s00530.11e-114(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1531737