PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.011G006300.1

Common Name

POPTR_0021s00430g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 115aa MW: 13454.7 Da PI: 9.7477

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.011G006300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.4	1.6e-33	34	87	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+ave+LGG+++AtPk +l++m+v++Lt++hvkSHLQ+YR+ Potri.011G006300.1 34 PRLRWTPDLHHCFVHAVERLGGEDRATPKMVLQIMDVEDLTISHVKSHLQMYRS 87 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-32	30	89	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.824	30	90	IPR017930	Myb domain
SuperFamily	SSF46689	4.48E-16	32	88	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-25	34	88	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-7	35	86	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MRTTERRSVV GVNFQEIGLR SSAIVRPYVR SKMPRLRWTP DLHHCFVHAV ERLGGEDRAT 60 PKMVLQIMDV EDLTISHVKS HLQMYRSMKH EWMIQEEKNS KEMAVFINGI NEFM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-21	35	90	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-21	35	90	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-21	35	90	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-21	35	90	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-21	35	90	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-21	35	90	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-21	35	90	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-21	35	90	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.011G006300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC149575	2e-35	AC149575.1 Populus trichocarpa clone Pop1-41G18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020541306.1	2e-46	putative Myb family transcription factor At1g14600 isoform X2
Swissprot	Q700D9	2e-28	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	U7E313	2e-77	U7E313_POPTR; Uncharacterized protein
STRING	POPTR_0021s00430.1	3e-78	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9381	28	40
Representative plant	OGRP285	15	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	1e-33	G2-like family protein

Link Out ? help Back to Top
Phytozome	Potri.011G006300.1
Entrez Gene	18111220