PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G051600.1
Common NamePOPTR_0011s05130g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 212aa    MW: 24383.6 Da    PI: 9.7881
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G051600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.71.6e-32321332102
                         HHHHHHHHHC..........TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
        HSF_DNA-bind   2 Flkklyeile..........deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                         Fl+k+y++le          +++ k+++sw+++gn fvv+ + ef++  Lp+yFkhsnf+SF+RQLn+YgFkk+++++         weFk
  Potri.011G051600.1  32 FLSKTYDLLEeggahdsvddHPHGKRVVSWNAEGNGFVVWSPAEFSELTLPRYFKHSNFSSFIRQLNTYGFKKTSSKQ---------WEFK 113
                         9*********88887777766799**************************************************9988.........**** PP

                         ESXXXXXXXXXXXXXXXXXX CS
        HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                         h++F+kg++++l +i rkk 
  Potri.011G051600.1 114 HEKFQKGRRHMLVEIIRKKC 133
                         ****************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.3E-3523126IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.25E-2528131IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-4028131IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.5E-2932131IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MAATFSQLDQ DTTSKSSSSN TRSPRTRSPA PFLSKTYDLL EEGGAHDSVD DHPHGKRVVS  60
WNAEGNGFVV WSPAEFSELT LPRYFKHSNF SSFIRQLNTY GFKKTSSKQW EFKHEKFQKG  120
RRHMLVEIIR KKCEPSMFPA YLKASSNQQN AIIDMEETNC LTLMAENKNL RREKLELQIQ  180
IAQFKALETK LLDCLTQYNI GNHQNKTRRL C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B1e-16301312104Putative transcription factor
5d5x_B1e-16301312104Putative transcription factor
5d5x_E1e-16301312104Putative transcription factor
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G051600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006377347.11e-159heat stress transcription factor A-6b
TrEMBLU5FYD01e-158U5FYD0_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05130.11e-159(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.18e-33heat shock transcription factor B2A