PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G054000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 419aa    MW: 46796.1 Da    PI: 6.0618
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G054000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3469.5e-15198277378
                         EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT- CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegD 78 
                         k l++sdv+++gr+vlpk+ +ee+   +  +e++ l+l+d  s+++W +kl++  ++ks++yvl+ ++ eFvk +gL++gD
  Potri.011G054000.1 198 KDLKNSDVGSLGRIVLPKREVEENlpPLHDKEGILLVLRDiYSNQEWGLKLKFwtNNKSRMYVLE-NTGEFVKRHGLETGD 277
                         7799**********************55556889******7788*******99888888889999.**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-20192277IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.192196301IPR003340B3 DNA binding domain
SMARTSM010196.9E-12196291IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-17197278IPR015300DNA-binding pseudobarrel domain
PfamPF023626.2E-11198278IPR003340B3 DNA binding domain
CDDcd100177.91E-18200277No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MENVFPTSST NSGNTTTTTN ASSVMMGCPQ NSQFSSIYGP LSYPSTPSSS LTQSNYFAPQ  60
YYTTPPCETT QFPSTDSLDQ RSQYTPAADP FYPVMVGQNA IEMQRSCILQ PNALQLEQER  120
RALDAYKTKV ARCMRKLARQ RRLGRASSGA SSTRITDASR LALHGAGTDG QNSRTNTSKD  180
LFEFLTPDNK KLRALLRKDL KNSDVGSLGR IVLPKREVEE NLPPLHDKEG ILLVLRDIYS  240
NQEWGLKLKF WTNNKSRMYV LENTGEFVKR HGLETGDYES KNLYFSITKV QRPESALAQT  300
PHPKSHNCNH LTEHMWQDGD EEYTSLALLT EQLENKEQEE ANSLGAVPMD FSCSYTNELE  360
LNNNPFNNIS TYTQPASAAM QTSPPNGKMK AVDDSHDVDD CYTGLGMLPD VHSYNFSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A4e-431862873110B3 domain-containing transcription factor LEC2
6j9c_D4e-431862873110B3 domain-containing transcription factor LEC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G054000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024437157.10.0B3 domain-containing transcription factor LEC2
TrEMBLA0A2K1YFW80.0A0A2K1YFW8_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05380.11e-173(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123482127
Representative plantOGRP7881766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.11e-38B3 family protein