PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.011G054400.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 171aa MW: 19612.4 Da PI: 10.8624

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.011G054400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	32.1	2.4e-10	61	88	35	62
zf-Dof 35 aCrryWtkGGalrnvPvGggrrknkkss 62 +CrryWt GG lrnv v g +r+ k+s+ Potri.011G054400.1 61 SCRRYWTLGGNLRNVSVRGDCRRGKRSK 88 8**********************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	0.01	51	81	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.5E-7	61	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MFVAKSTKDY NFTAMQREIQ QDRGGSEDVK PNERRKLKPA KGYDQQKHYK SATHTRGGAL 60 SCRRYWTLGG NLRNVSVRGD CRRGKRSKRL SLLVLVRINR LSHSYSHNHN LSNITWLPLR 120 SFKFCFEGKR IKEFGLTSSW DVFDGILEDK THPIGPSRNY GLCFNGLMAT *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.011G054400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K1YFY9	1e-124	A0A2K1YFY9_POPTR; Uncharacterized protein
STRING	POPTR_0011s05420.1	2e-92	(Populus trichocarpa)

Link Out ? help Back to Top
Phytozome	Potri.011G054400.1