PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G055900.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 145aa    MW: 16188.8 Da    PI: 7.0071
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G055900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.31.7e-4160136278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         Cq+++C++dl++ak+yhrrhkvCe+h+kap + v+gl+qrfCqqCsrfh+lsefD++krsCrrrLa+hnerrrk++a
  Potri.011G055900.1  60 CQADNCTSDLADAKRYHRRHKVCEFHAKAPFAPVNGLQQRFCQQCSRFHDLSEFDDSKRSCRRRLAGHNERRRKSSA 136
                         **************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375752.8E-581144IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.105.8E-3357121IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.54757134IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.57E-3958138IPR004333Transcription factor, SBP-box
PfamPF031107.5E-3260133IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
METSRAEGKR SLKEIEDEEE EEDDEDIAGG LGFVDDDKIK KKGKKGSSGG GSSSMLLVSC  60
QADNCTSDLA DAKRYHRRHK VCEFHAKAPF APVNGLQQRF CQQCSRFHDL SEFDDSKRSC  120
RRRLAGHNER RRKSSAEYQG EGSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-3750133184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.62440.0stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G055900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006377387.21e-101squamosa promoter-binding-like protein 3
SwissprotQ387412e-46SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A2K1YFY81e-100A0A2K1YFY8_POPTR; Squamosa promoter-binding-like protein
STRINGPOPTR_0011s05480.11e-71(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.19e-41squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]