PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G056600.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 759aa    MW: 83490.5 Da    PI: 4.8679
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G056600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH261.6e-08261280525
                         --SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                         +C+ffa+ G+C +G++C+F H
  Potri.011G056600.2 261 ICDFFAK-GWCIRGSSCRFLH 280
                         8******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF161319.8E-7228287IPR032297Torus domain
SuperFamilySSF902293.4E-6256281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.718256283IPR000571Zinc finger, CCCH-type
SMARTSM003560.0017256282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-4261281IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MPPSAAATGD DDEDHALPSP NPSFAQISGS DMDIDNNGDD EEEEDPEEEV GGGDDDDDDE  60
KIEEIEEKEE VEEEEVDQRR NDNRQHLESD RQMGSHSTHE MSELREDSIS NFKCSGPLDG  120
PLTLQKEKSC VNYLDSWSPK LSKHLVIAQK NGTLEHAINK TDAFRNSKTH LSNSSEAIAV  180
ETTEPFVITG IEVDVVLSKR NCLGQEANVV LDSKEELKPV DVKSEDSKEQ TESRLVASGT  240
RARSLSPSTE LRDGNKRAAV ICDFFAKGWC IRGSSCRFLH TTNKADNTGQ QLGVDEVATR  300
EDQFDEGVRN ILETPKFPHF PDPVAASTGK EATFSSHFSS ERLPPLEHKE NERLHQLDDK  360
HKLSLRQRVG IPLNAKQFSS SKDDPGFSSS FKDVGIENFR QQWPATDYGS YTSLINRGSS  420
FSFSSSFDTS LLGSQKLLDS DRASRSSSLL QSASAFSGSE PESLSLASVP GDQLRHAEHK  480
TKISSNDWEP SVPFRPSFFI TPEMISSAGS KYDPLRDSFV LPNVGDKSFK FSFFSLGASI  540
SNTSQQPIYG DSLSNRNFGT EFNGDKSTIS SHDKPHGSLS DKNCSTPGKD SFTTATVTGG  600
AGTADGENGS ALKEESASGI GYDKVNRVTN KIDRDARPQT DGSRHEKDLK ADSVRQNNDM  660
EVDQKIGGDT QKESKVLRHF RSALIDFVKD LLKPTWREGH LSKDAHNTIV KKTVEKVLST  720
LQPHQIPATV ESIKQYLSSS QPKMAKLVEG YISKYGKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G056600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024437338.10.0protein FRIGIDA-ESSENTIAL 1 isoform X2
TrEMBLA0A2K1YG000.0A0A2K1YG00_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05550.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.15e-39C3H family protein