PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G057000.2
Common NamePOPTR_0011s05580g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 183aa    MW: 19548.8 Da    PI: 9.0967
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G057000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.16.7e-212877255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g
  Potri.011G057000.2 28 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRG 77
                        69*******.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-142877IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-312885IPR001471AP2/ERF domain
CDDcd000184.63E-182886No hitNo description
PROSITE profilePS5103223.1032885IPR001471AP2/ERF domain
SMARTSM003801.6E-372891IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-212885IPR016177DNA-binding domain
PRINTSPR003673.3E-112940IPR001471AP2/ERF domain
PRINTSPR003673.3E-115167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MAPREKTAPG KVNGGTCGGA GGGGKEVHFR GVRKRPWGRY AAEIRDPGKK SRVWLGTFDT  60
AEEAARAYDA AAREFRGSKA KTNYAYPSYE NVRKNTISSP SQSSTVEFSS SDTPLDLNLG  120
PAVSTVRLPF QPMPMGFSCG GIQSDSDSSS IVFDLNHQDI KTPRSSVDLD LNLNLPPPPE  180
IA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-201884471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.61431e-78bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, mostly in root tip, lateral root tips, cortex and vascular tissues. {ECO:0000269|PubMed:10945353}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G057000.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006377397.23e-92ethylene-responsive transcription factor 11
SwissprotQ9LW497e-38ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A2K1YG086e-91A0A2K1YG08_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05580.18e-92(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-25erf domain protein 9