PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.011G061600.1

Common Name

POPTR_0011s06000g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 160aa MW: 18261.3 Da PI: 5.8144

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.011G061600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	28.2	5.2e-09	3	59	44	100
DUF260 44 kllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++l++l+ ++r +a++s+++eA ++ +d ++G +g ++kl +q+k+e ++l+++ Potri.011G061600.1 3 RMLRSLEVQDRAKAVESMIWEASCWSKDSINGPLGCLKKLIDSERQAKQENQQLRKQ 59 7999****************************************9999999999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	8.626	1	60	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.7E-7	3	56	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MERMLRSLEV QDRAKAVESM IWEASCWSKD SINGPLGCLK KLIDSERQAK QENQQLRKQL 60 YNLSQSGRST LTEEKQQNQT NEQMLSMEGS TNDKVYAIPN SGIATNYYFD SEEGMELHSQ 120 GNSYTRCGSV NPQEIQGGRF LHTRLQSSPF PNYEINGITR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.011G061600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216917	0.0	AC216917.1 Populus trichocarpa clone POP066-L06, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K1YGB5	1e-116	A0A2K1YGB5_POPTR; Uncharacterized protein (Fragment)
STRING	POPTR_0011s06000.1	1e-115	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF28066	3	3

Link Out ? help Back to Top
Phytozome	Potri.011G061600.1
Entrez Gene	18103100