PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G065500.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 225aa    MW: 24786.6 Da    PI: 10.1271
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G065500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.5e-113980349
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHH CS
                 HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAve 49
                        ++h+e+ErrRR+riN  +++Lr l+P       +K++Ka+ L  ++ 
  Potri.011G065500.1 39 KSHSEAERRRRERINAHLATLRGLVPCT-----EKMDKATLLAAVIS 80
                        58*************************8.....7*****99988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.783685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-123987IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-93980IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-124087IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-94291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.41E-4120188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
RTMVSQTLML DAEKGELLKA PARIGKMGIS EAKAFAALKS HSEAERRRRE RINAHLATLR  60
GLVPCTEKMD KATLLAAVIS QVKEHKKNAL EACKGLLVPM DDDEVKVETY FDGTLHFKAS  120
ICCDYRPELL SDLRNAIDAL PLKTVSAEIS TLGSRLKNEF VLTNRRNKNA LDDAGAIQLL  180
TNSIHQTLTS VMEKGSASPK YSPRTKLPNK RRRVTFFDSS SSSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14449ERRRRE
2209213KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G065500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2142841e-72AC214284.1 Populus trichocarpa clone POP076-F15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316828.21e-163transcription factor bHLH30
TrEMBLA0A2K1YGE91e-161A0A2K1YGE9_POPTR; Uncharacterized protein
STRINGXP_002522566.11e-112(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.18e-31bHLH family protein