PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G075800.1
Common NamePOPTR_0011s03140g, PTAG2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27273.9 Da    PI: 9.9514
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G075800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.99.7e-322474151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  Potri.011G075800.1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 74
                        79***********************************************95 PP
2K-box113.52.1e-37921884100
               K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                         s++ s++ea+a+ +qqe+akL+++i nLq+++R++lGe+L+ Ls+keL++Le +Lek++ +iRskKnell+++ie++qk+e +l+++n+ L
  Potri.011G075800.1  92 SNNGSVSEANAQFYQQEAAKLRSQIGNLQNSNRNMLGESLSALSVKELKSLEIKLEKGIGRIRSKKNELLFAEIEYMQKREIDLHNNNQLL 182
                         444459************************************************************************************* PP

               K-box  95 rkklee 100
                         r+k++e
  Potri.011G075800.1 183 RAKIAE 188
                         ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-401675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.4591676IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-331789IPR002100Transcription factor, MADS-box
CDDcd002657.98E-451793No hitNo description
PRINTSPR004046.5E-331838IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003198.7E-272572IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-335374IPR002100Transcription factor, MADS-box
PfamPF014861.0E-27100186IPR002487Transcription factor, K-box
PROSITE profilePS5129714.873102192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAYQNEPQES SPLRKLGRGK VEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSSRGRLY EYSNNSVKST IERYKKACAD SSNNGSVSEA NAQFYQQEAA KLRSQIGNLQ  120
NSNRNMLGES LSALSVKELK SLEIKLEKGI GRIRSKKNEL LFAEIEYMQK REIDLHNNNQ  180
LLRAKIAENE RKRQHMNLMP GGVNFEIMQS QPFDSRNYSQ VNGLPPANHY PHEDQLFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-201684169Myocyte-specific enhancer factor 2B
1tqe_Q4e-201684169Myocyte-specific enhancer factor 2B
1tqe_R4e-201684169Myocyte-specific enhancer factor 2B
1tqe_S4e-201684169Myocyte-specific enhancer factor 2B
5f28_A4e-201684169MEF2C
5f28_B4e-201684169MEF2C
5f28_C4e-201684169MEF2C
5f28_D4e-201684169MEF2C
6c9l_A4e-201684169Myocyte-specific enhancer factor 2B
6c9l_B4e-201684169Myocyte-specific enhancer factor 2B
6c9l_C4e-201684169Myocyte-specific enhancer factor 2B
6c9l_D4e-201684169Myocyte-specific enhancer factor 2B
6c9l_E4e-201684169Myocyte-specific enhancer factor 2B
6c9l_F4e-201684169Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.124500.0bud| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flower. Preferentially expressed in stamen and carpel and weakly in petal. Undetected in leaves and roots.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G075800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7143860.0JQ714386.1 Populus simonii x Populus nigra isolate A flowering locus C (FLC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317315.11e-175floral homeotic protein AGAMOUS
RefseqXP_024436780.11e-175floral homeotic protein AGAMOUS
RefseqXP_024436781.11e-175floral homeotic protein AGAMOUS
SwissprotQ408721e-131AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLO651121e-174O65112_POPTR; AGAMOUS homolog
STRINGEOY278721e-149(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-114MIKC_MADS family protein
Publications ? help Back to Top
  1. Brunner AM, et al.
    Structure and expression of duplicate AGAMOUS orthologues in poplar.
    Plant Mol. Biol., 2000. 44(5): p. 619-34
    [PMID:11198423]