PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G080000.1
Common NamePOPTR_0011s02710g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 240aa    MW: 26664.7 Da    PI: 5.8541
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G080000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.94.8e-051892251354
                         HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         R+++++   +Lr ++P  +       ++ +++L +Av+Y+ksL
  Potri.011G080000.1 189 RQKMKTMVKTLRGIVPGgD------QMNTVTVLDEAVRYLKSL 225
                         799*************955......8***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.937176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-6183231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-8186232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.13E-6186230No hitNo description
SuperFamilySSF474591.31E-8187233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MHSDRYFRSK EAMPPLTNQV DNNNMHFPVA TTFAAVQPLA AKHLMPVHGI EFQSSEICPR  60
NFIIFDQADH RSQVMYNPAV AHNHGGPDFN IHATYIQENF ERTDTYNVER EISSSLKEDS  120
DDIDALMSLE EEEPEECDGE EVSTARTCRN YGSSSPDSCS SYGAKPMKNG SSVQKCSSSG  180
SSSNSERKRQ KMKTMVKTLR GIVPGGDQMN TVTVLDEAVR YLKSLKVEVQ KLGVGNFKN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.146879e-62stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G080000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316733.20.0transcription factor bHLH144
RefseqXP_024437105.10.0transcription factor bHLH144
RefseqXP_024437106.10.0transcription factor bHLH144
RefseqXP_024437107.10.0transcription factor bHLH144
RefseqXP_024437108.10.0transcription factor bHLH144
RefseqXP_024437109.10.0transcription factor bHLH144
TrEMBLB9I1021e-180B9I102_POPTR; Uncharacterized protein
STRINGPOPTR_0011s02710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114111113
Representative plantOGRP596855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.24e-42bHLH family protein