PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.011G101000.2

Common Name

POPTR_0011s10080g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NF-YA

Protein Properties

Length: 175aa MW: 19004.1 Da PI: 10.1573

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.011G101000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.8	7.3e-33	78	134	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k +ksrkpylheSRh+hAl+R+Rg+gGrF Potri.011G101000.2 78 EEPVFVNAKQYHGILRRRQSRAKAESENKA-IKSRKPYLHESRHQHALKRARGCGGRF 134 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.7E-36	76	137	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.841	77	137	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.6E-27	79	134	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.0E-23	80	102	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	82	102	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.0E-23	111	134	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MTSSVHDLSD NSEAGEQQKH SEPQVQTSSP ANALAHPGIS PPNFQYATPQ LGAGHAMVHL 60 QLMGIQQAGV PLPSDAVEEP VFVNAKQYHG ILRRRQSRAK AESENKAIKS RKPYLHESRH 120 QHALKRARGC GGRFLNSKKK ENQQQNGMAP GDKSQSNVNL NANKNDIASL DDKS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-22	77	142	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.12256	1e-124	bud

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.011G101000.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC182693	1e-102	AC182693.2 Populus trichocarpa clone Pop1-44N6, complete sequence.
GenBank	AC187864	1e-102	AC187864.2 Populus trichocarpa clone Pop1-32E3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024436725.1	1e-126	nuclear transcription factor Y subunit A-7-like isoform X2
Refseq	XP_024467585.1	1e-126	nuclear transcription factor Y subunit A-7 isoform X2
Swissprot	Q84JP1	9e-54	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A2K1YI42	1e-125	A0A2K1YI42_POPTR; Uncharacterized protein
STRING	POPTR_0011s10080.1	1e-118	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	4e-56	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Potri.011G101000.2
Entrez Gene	18103293

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]