PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G101000.3
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YA
Protein Properties Length: 142aa    MW: 15756.8 Da    PI: 6.6678
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G101000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA52.81.3e-1679114137
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkp 37 
                         +ep++VNaKQy++Il+RRq+Rak+e+e+k  +ksrk 
  Potri.011G101000.3  79 EEPVFVNAKQYHGILRRRQSRAKAESENKA-IKSRKV 114
                         69***************************9.999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.1E-877135IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115217.76478113IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.1E-1280114IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS00686083103IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MTSSVHDLSD NSEAGEQQKH SEPQAPAAYP YPDPYYRSIF APCDAQPYAP QPYGAQPMVH  60
LQLMGIQQAG VPLPSDAVEE PVFVNAKQYH GILRRRQSRA KAESENKAIK SRKVHCWLSE  120
ANFILLAFDI VFCSPNILES K*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.122561e-122bud
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G101000.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826931e-139AC182693.2 Populus trichocarpa clone Pop1-44N6, complete sequence.
GenBankAC1878641e-139AC187864.2 Populus trichocarpa clone Pop1-32E3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006377668.12e-71nuclear transcription factor Y subunit A-7 isoform X1
RefseqXP_024436724.12e-71nuclear transcription factor Y subunit A-7-like isoform X1
SwissprotQ84JP12e-43NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLB9NB876e-70B9NB87_POPTR; NF-YA family protein
STRINGPOPTR_0011s10080.19e-71(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-32nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]